Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 1.8e-86 323.2 248 100.0
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 9.9e-69 264.2 250 90.0
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 9.9e-69 264.2 251 89.6
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.9e-68 262.7 250 89.6
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.9e-67 260.0 251 88.8
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 9.2e-67 257.7 252 88.5
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 9.0e-54 214.5 250 81.2
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.8e-47 193.0 199 92.5
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 9.3e-43 177.9 252 73.0
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 1.3e-41 174.1 251 72.5
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 4.3e-40 169.1 248 69.0
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 7.4e-40 168.3 240 71.2
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.3e-39 167.5 251 68.1
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.8e-38 163.7 252 67.5
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 2.4e-38 163.3 251 67.7
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 3.1e-38 162.9 263 68.8
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.5e-37 160.6 271 67.2
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.6e-37 159.8 249 68.7
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 3.4e-37 159.5 239 70.7
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 3.4e-37 159.5 240 69.6
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 4.5e-37 159.1 254 67.7
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 9.3e-35 151.4 252 67.9
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 9.3e-35 151.4 248 66.1
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 1.6e-34 150.6 247 68.4
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.8e-33 147.1 249 66.7
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 3.9e-33 146.0 240 67.1
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 2.5e-32 143.3 260 63.8
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 4.3e-32 142.5 252 67.1
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 4.3e-32 142.5 234 67.5
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 5.6e-32 142.1 243 66.7
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 1.3e-31 141.0 252 66.3
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 1.3e-31 141.0 253 65.2
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 2.1e-31 140.2 252 66.3
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 2.1e-31 140.2 249 66.3
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.8e-31 139.8 252 65.9
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.7e-31 139.4 253 66.4
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 6.2e-31 138.7 241 68.5
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.1e-30 137.9 244 66.4
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 1.4e-30 137.5 245 52.7
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.2e-29 134.4 242 65.7
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.2e-29 134.4 242 65.7
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 1.2e-29 134.4 239 66.1
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.5e-29 134.0 254 63.4
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 1.5e-29 134.0 251 65.3
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 2.6e-29 133.3 249 65.1
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 4.5e-29 132.5 246 65.0
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 4.5e-29 132.5 246 65.0
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 1.3e-28 131.0 247 63.6
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.3e-28 131.0 240 65.4
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 2.9e-28 129.8 245 64.1
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 3.8e-28 129.4 257 63.8
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.9e-28 129.0 240 65.4
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.9e-28 129.0 240 65.0
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 4.9e-28 129.0 251 61.4
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 8.4e-28 128.3 238 66.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 8.4e-28 128.3 264 61.4
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 1.1e-27 127.9 241 64.3
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 1.1e-27 127.9 247 63.2
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.4e-27 127.5 250 63.2
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 5.5e-27 125.6 270 60.7
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 5.5e-27 125.6 239 65.3
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 7.1e-27 125.2 81 76.5
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 7.1e-27 125.2 302 55.6
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 1.2e-26 124.4 213 70.4
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 1.2e-26 124.4 233 65.2
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.2e-26 124.4 245 66.1
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.6e-26 124.0 255 60.0
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 2.1e-26 123.6 246 52.4
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 2.1e-26 123.6 252 61.1
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 2.1e-26 123.6 270 59.6
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 6.1e-26 122.1 250 63.2
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.0e-25 121.3 252 59.9
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 1.8e-25 120.6 82 74.4
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 3.9e-25 119.4 262 59.9
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 3.9e-25 119.4 262 59.9
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 3.9e-25 119.4 264 61.0
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 5.1e-25 119.0 199 72.9
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 6.7e-25 118.6 234 62.4
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 6.7e-25 118.6 257 60.3
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 6.7e-25 118.6 250 61.6
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 8.7e-25 118.2 186 74.7
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 1.5e-24 117.5 200 73.0
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 1.5e-24 117.5 164 84.1
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 2.5e-24 116.7 243 63.4
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 8.2e-23 111.7 245 60.4
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.1e-22 111.3 193 73.6
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 1.8e-22 110.5 211 65.9
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 4.1e-22 109.4 249 61.4
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.1e-22 109.4 75 73.3
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 9.0e-22 108.2 195 55.4
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.5e-21 107.5 235 63.4
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 4.5e-21 105.9 202 72.3
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.3e-20 104.4 239 61.1
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 2.9e-20 103.2 75 64.0
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 1.4e-19 100.9 238 58.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 4.2e-19 99.4 73 69.9
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 5.5e-19 99.0 73 65.8
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 3.6e-18 96.3 73 68.5
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 4.6e-18 95.9 232 60.3
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 1.0e-17 94.7 294 53.1
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 1.5e-16 90.9 262 56.9
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 2.0e-16 90.5 68 61.8
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 2.0e-16 90.5 247 55.9
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 4.3e-16 89.4 381 43.0
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 6.9e-14 82.0 198 52.0
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 6.9e-14 82.0 262 56.1
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 9.1e-14 81.6 203 33.5
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.7e-12 77.4 207 63.8
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.9e-12 76.6 232 57.8
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 5.0e-12 75.9 272 54.4
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 5.5e-11 72.4 54 57.4
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 7.2e-11 72.0 206 43.7
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 9.4e-11 71.6 97 51.5
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 3.0e-09 66.6 45 66.7
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 3.7e-07 59.7 34 73.5
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 1.1e-06 58.2 194 59.3
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 4.1e-06 56.2 36 72.2
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 7.0e-06 55.5 36 72.2


User provided reference genes

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