Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.9e-272 941.4 522 100.0
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 2.9e-256 888.3 522 94.6
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.5e-255 885.9 522 94.4
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.3e-248 862.8 582 85.1
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.9e-247 859.0 582 84.7
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.6e-246 855.9 583 84.7
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 1.7e-203 713.0 494 80.0
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 1.5e-196 689.9 498 77.9
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.2e-179 632.9 452 82.5
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 3.8e-179 632.1 495 69.5
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 4.2e-178 628.6 495 70.9
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 2.5e-175 619.4 441 76.9
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 2.4e-173 612.8 493 69.0
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 1.5e-172 610.1 493 69.8
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 3.8e-171 605.5 492 69.1
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 5.5e-170 601.7 495 65.7
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 9.4e-170 600.9 494 69.6
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 3.3e-167 592.4 494 67.4
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.1e-165 587.4 494 66.4
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 5.9e-164 581.6 501 67.9
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.0e-163 580.9 494 66.8
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 3.8e-163 578.9 498 67.3
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 6.1e-161 571.6 494 66.2
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.3e-160 569.7 494 65.8
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.1e-157 560.8 494 65.0
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.2e-156 557.4 494 64.8
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.8e-152 543.5 495 63.4
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 3.3e-151 539.3 520 61.9
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 4.4e-151 538.9 573 56.5
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 2.2e-150 536.6 552 59.1
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.1e-149 534.3 524 60.9
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 2.6e-148 529.6 496 61.1
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 2.6e-148 529.6 492 60.0
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 7.7e-148 528.1 496 61.7
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 1.0e-147 527.7 432 68.8
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 5.0e-147 525.4 494 61.9
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 4.7e-145 518.8 503 59.8
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 4.8e-142 508.8 496 60.7
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 6.1e-137 491.9 497 58.4
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 2.2e-134 483.4 496 58.7
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 3.7e-134 482.6 465 61.9
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 6.3e-134 481.9 503 56.7
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 9.1e-133 478.0 497 55.7
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 2.3e-131 473.4 497 55.3
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.5e-130 469.9 496 57.3
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 9.5e-130 468.0 496 57.3
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 2.1e-129 466.8 506 55.7
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 3.6e-129 466.1 497 56.3
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.4e-128 464.2 498 57.6
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 1.2e-127 461.1 500 56.4
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 2.0e-127 460.3 502 54.4
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 5.7e-127 458.8 498 56.6
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 9.8e-127 458.0 507 54.2
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 2.2e-126 456.8 500 57.4
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 1.8e-125 453.8 500 56.6
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 3.1e-125 453.0 433 61.2
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 7.0e-125 451.8 497 55.1
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.6e-124 450.7 530 57.9
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 1.6e-124 450.7 530 57.9
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.3e-123 447.6 495 56.2
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 1.3e-123 447.6 496 55.4
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 4.3e-122 442.6 494 54.3
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 9.5e-122 441.4 494 55.7
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 4.0e-120 436.0 512 53.9
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.9e-117 427.2 500 53.8
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 4.4e-111 406.0 447 56.8
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 1.2e-108 397.9 437 56.5
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 2.7e-108 396.7 354 64.7
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 2.8e-105 386.7 482 54.1
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 3.7e-102 376.3 527 48.0
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 3.0e-99 366.7 498 49.0
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 1.2e-95 354.8 501 47.3
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 4.4e-95 352.8 496 47.0
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 2.4e-93 347.1 413 54.5
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 7.3e-90 335.5 395 50.4
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 2.8e-89 333.6 499 47.1
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.7e-84 317.0 372 53.8
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 6.0e-84 315.8 419 49.4
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 3.9e-83 313.2 322 56.5
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 3.1e-80 303.5 256 64.5
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 2.3e-51 207.6 320 42.8
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 1.5e-42 178.3 316 42.7
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 1.7e-38 164.9 269 41.6
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.6e-36 158.3 319 38.2
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.7e-28 131.0 159 47.8
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 5.7e-26 123.2 538 30.1
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 1.1e-24 119.0 79 82.3
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.1e-24 119.0 80 82.5
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 5.9e-23 113.2 234 38.0
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 1.3e-22 112.1 162 46.9
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 1.4e-19 102.1 68 80.9
FvH4_5g29470 Fragaria vesca HOM05D007238 ORTHO05D009206 4.0e-19 100.5 58 89.7
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.5e-18 98.6 65 73.8
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.3e-17 95.5 53 92.5
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 2.8e-17 94.4 62 74.2
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 9.1e-16 89.4 67 70.1
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 3.5e-15 87.4 48 87.5
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 5.0e-14 83.6 355 30.4
FAN13G3012 Fragaria x ananassa HOM05D007238 ORTHO05D009206 3.3e-13 80.9 43 88.4
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 7.2e-13 79.7 288 31.6
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 9.5e-13 79.3 44 88.6
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 2.0e-10 71.6 39 89.7
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 3.4e-10 70.9 61 65.6
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 2.9e-09 67.8 67 53.7
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 8.3e-09 66.2 60 63.3
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 8.3e-09 66.2 60 63.3


User provided reference genes

Program Settings