Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212901 Rosa chinensis HOM05D007271 ORTHO05D009217 0.0e+00 1082.4 545 100.0
FvH4_5g23600 Fragaria vesca HOM05D007271 ORTHO05D009217 1.2e-289 999.2 545 91.4
FAN18G2511 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.6e-289 997.7 545 91.2
FAN13G0287 Fragaria x ananassa HOM05D007271 ORTHO05D009217 6.8e-288 993.4 545 91.2
FAN18G2097 Fragaria x ananassa HOM05D007271 ORTHO05D009217 1.5e-287 992.3 545 90.8
FAN08G2102 Fragaria x ananassa HOM05D007271 ORTHO05D009217 9.8e-287 989.6 545 90.8
Prupe.5G024200 Prunus persica HOM05D007271 ORTHO05D009217 1.3e-211 740.0 544 68.9
MD00G1000300 Malus domestica HOM05D007271 ORTHO05D009217 5.3e-208 728.0 544 67.5
FAN04G0635 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.2e-189 665.6 545 67.2
Hma1.2p1_0635F.1_g193160 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 2.0e-170 603.2 529 57.8
Dinv29036 Davidia involucrata HOM05D007271 ORTHO05D009217 3.5e-167 592.4 515 60.0
CANSAT21G2130 Cannabis sativa HOM05D007271 ORTHO05D009217 1.0e-166 590.9 515 59.0
CiPaw.12G070300 Carya illinoinensis HOM05D007271 ORTHO05D009217 2.9e-166 589.3 520 59.2
Oeu061071.1 Olea europaea HOM05D007271 ORTHO05D009217 1.5e-165 587.0 512 57.4
Haze_08102 Corylus avellana HOM05D007271 ORTHO05D009217 8.0e-164 581.3 507 59.0
Nitab4.5_0000109g0130 Nicotiana tabacum HOM05D007271 ORTHO05D009217 3.0e-163 579.3 505 57.2
TAR375G0504 Trochodendron aralioides HOM05D007271 ORTHO05D009217 2.0e-162 576.6 516 57.2
CAN.G773.8 Capsicum annuum HOM05D007271 ORTHO05D009217 3.4e-162 575.9 529 56.5
Nitab4.5_0005761g0060 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.7e-161 573.5 504 56.9
PGSC0003DMG400035874 Solanum tuberosum HOM05D007271 ORTHO05D009217 1.8e-160 570.1 528 55.3
Peaxi162Scf00185g01619 Petunia axillaris HOM05D007271 ORTHO05D009217 5.4e-160 568.5 519 56.5
Sopen08g024690 Solanum pennellii HOM05D007271 ORTHO05D009217 7.0e-160 568.2 528 55.5
Peaxi162Scf00408g00227 Petunia axillaris HOM05D007271 ORTHO05D009217 2.3e-158 563.1 525 54.1
GSVIVG01026362001 Vitis vinifera HOM05D007271 ORTHO05D009217 3.8e-158 562.4 522 53.4
Cfa012560 Carpinus fangiana HOM05D007271 ORTHO05D009217 5.0e-158 562.0 511 57.5
Ciclev10003885m.g Citrus clementina HOM05D007271 ORTHO05D009217 5.0e-158 562.0 521 55.1
Cc08_g04070 Coffea canephora HOM05D007271 ORTHO05D009217 6.6e-158 561.6 516 54.7
Solyc08g076040.2 Solanum lycopersicum HOM05D007271 ORTHO05D009217 6.6e-158 561.6 528 54.9
Lj8A323T49 Lonicera japonica HOM05D007271 ORTHO05D009217 8.6e-158 561.2 547 52.3
Lj2g0009393 Lotus japonicus HOM05D007271 ORTHO05D009217 8.6e-158 561.2 502 55.8
Manes.17G011200 Manihot esculenta HOM05D007271 ORTHO05D009217 2.1e-156 556.6 500 56.6
PGR042G3154 Punica granatum HOM05D007271 ORTHO05D009217 6.1e-156 555.1 503 54.3
Aqoxy7G00878 Aquilegia oxysepala HOM05D007271 ORTHO05D009217 1.2e-154 550.8 506 54.3
Potri.001G133700 Populus trichocarpa HOM05D007271 ORTHO05D009217 1.5e-154 550.4 510 55.5
Duzib068G0217 Durio zibethinus HOM05D007271 ORTHO05D009217 5.8e-154 548.5 529 55.4
Atru.chr6.1575 Acer truncatum HOM05D007271 ORTHO05D009217 6.4e-153 545.0 509 55.4
Lalb_Chr05g0215551 Lupinus albus HOM05D007271 ORTHO05D009217 8.3e-153 544.7 509 56.6
Eucgr.E01257 Eucalyptus grandis HOM05D007271 ORTHO05D009217 1.4e-152 543.9 491 55.6
Thecc.03G314300 Theobroma cacao HOM05D007271 ORTHO05D009217 2.0e-151 540.0 491 57.8
VMungo1215G2496 Vigna mungo HOM05D007271 ORTHO05D009217 4.6e-151 538.9 506 54.5
SalBow4G2871 Salvia bowleyana HOM05D007271 ORTHO05D009217 7.8e-151 538.1 495 54.3
DCAR_004256 Daucus carota HOM05D007271 ORTHO05D009217 2.3e-150 536.6 488 54.3
Ca_25147_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 8.6e-150 534.6 504 53.8
Cpa.g.sc104.82 Carica papaya HOM05D007271 ORTHO05D009217 1.1e-149 534.3 510 53.1
DCAR_008194 Daucus carota HOM05D007271 ORTHO05D009217 1.1e-149 534.3 488 53.3
Eucgr.D02621 Eucalyptus grandis HOM05D007271 ORTHO05D009217 9.5e-149 531.2 488 55.3
Medtr5g027460 Medicago truncatula HOM05D007271 ORTHO05D009217 2.8e-148 529.6 502 53.6
MBI04_g36029_MAGBIO Magnolia biondii HOM05D007271 ORTHO05D009217 4.7e-148 528.9 502 52.2
Glyma.01G009700 Glycine max HOM05D007271 ORTHO05D009217 6.2e-148 528.5 508 53.9
Gohir.A12G204300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 6.2e-148 528.5 513 56.3
Gohir.D12G206700 Gossypium hirsutum HOM05D007271 ORTHO05D009217 2.3e-147 526.6 513 56.5
Gorai.008G222100 Gossypium raimondii HOM05D007271 ORTHO05D009217 8.9e-147 524.6 513 56.3
Oeu001193.1 Olea europaea HOM05D007271 ORTHO05D009217 1.7e-145 520.4 516 52.1
Psat2g139720 Pisum sativum HOM05D007271 ORTHO05D009217 6.4e-145 518.5 509 52.1
TWI14G0446 Tripterygium wilfordii HOM05D007271 ORTHO05D009217 1.9e-144 516.9 502 52.2
SalBow8G4630 Salvia bowleyana HOM05D007271 ORTHO05D009217 6.0e-143 511.9 510 50.0
Lsat_1_v5_gn_3_20940 Lactuca sativa HOM05D007271 ORTHO05D009217 7.8e-143 511.5 500 53.4
ClCG10G001150 Citrullus lanatus HOM05D007271 ORTHO05D009217 1.3e-142 510.8 518 51.0
Gorai.004G180600 Gossypium raimondii HOM05D007271 ORTHO05D009217 1.7e-142 510.4 516 53.7
Gohir.D08G173300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 1.9e-141 506.9 516 53.5
HanXRQChr17g0537681 Helianthus annuus HOM05D007271 ORTHO05D009217 3.1e-139 499.6 511 51.7
Actinidia14763 Actinidia chinensis HOM05D007271 ORTHO05D009217 1.2e-138 497.7 541 50.6
MELO3C013807.2 Cucumis melo HOM05D007271 ORTHO05D009217 1.5e-138 497.3 519 50.9
Gohir.A08G152200 Gossypium hirsutum HOM05D007271 ORTHO05D009217 2.6e-138 496.5 516 52.5
Lj4g0015364 Lotus japonicus HOM05D007271 ORTHO05D009217 4.6e-135 485.7 519 49.9
PGR031G3520 Punica granatum HOM05D007271 ORTHO05D009217 7.8e-135 485.0 472 52.3
Hma1.2p1_1486F.1_g286550 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 1.3e-134 484.2 473 52.6
CsaV3_3G001170 Cucumis sativus L. HOM05D007271 ORTHO05D009217 3.0e-134 483.0 517 48.9
Glyma.16G103000 Glycine max HOM05D007271 ORTHO05D009217 4.7e-132 475.7 495 51.3
Phvul.002G132600 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 4.7e-132 475.7 425 56.7
Sed0019673 Sechium edule HOM05D007271 ORTHO05D009217 4.0e-131 472.6 514 50.4
unitig_747.g21928 Utricularia gibba HOM05D007271 ORTHO05D009217 1.2e-127 461.1 503 47.1
arahy.Tifrunner.gnm1.ann1.3Y0Q41 Arachis hypogaea HOM05D007271 ORTHO05D009217 1.0e-126 458.0 495 47.7
QL12p000436 Quercus lobata HOM05D007271 ORTHO05D009217 2.3e-126 456.8 434 55.8
arahy.Tifrunner.gnm1.ann1.CI81A0 Arachis hypogaea HOM05D007271 ORTHO05D009217 4.0e-123 446.0 485 48.2
Medtr8g071050 Medicago truncatula HOM05D007271 ORTHO05D009217 1.2e-122 444.5 504 46.2
Phvul.003G273200 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 3.4e-122 443.0 480 47.5
unitig_748.g8136 Utricularia gibba HOM05D007271 ORTHO05D009217 4.4e-122 442.6 498 46.6
Psat4g109960 Pisum sativum HOM05D007271 ORTHO05D009217 2.2e-121 440.3 481 48.4
VMungo0251G3497 Vigna mungo HOM05D007271 ORTHO05D009217 2.7e-119 433.3 476 47.3
PSO717G0049 Papaver somniferum HOM05D007271 ORTHO05D009217 6.0e-119 432.2 528 43.9
TPR.G28964 Trifolium pratense HOM05D007271 ORTHO05D009217 5.6e-117 425.6 477 47.2
Os06g0113900 Oryza sativa ssp. japonica HOM05D007271 ORTHO05D009217 6.2e-116 422.2 492 43.7
Zm00001eb268890 Zea mays HOM05D007271 ORTHO05D009217 1.1e-115 421.4 493 43.6
ECA246G0509 Erigeron canadensis HOM05D007271 ORTHO05D009217 1.1e-109 401.4 505 46.1
Migut.A00579 Erythranthe guttata HOM05D007271 ORTHO05D009217 1.3e-108 397.9 506 43.9
Nitab4.5_0000809g0020 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.3e-105 387.9 357 55.5
ATR0829G091 Amborella trichopoda HOM05D007271 ORTHO05D009217 5.3e-99 365.9 402 47.3
Ciclev10003404m.g Citrus clementina HOM05D007271 ORTHO05D009217 7.0e-75 285.8 509 35.6
SEGI_35026 Sequoiadendron giganteum HOM05D007271 ORTHO05D009217 1.6e-71 274.6 506 33.4
unitig_32.g10968 Utricularia gibba HOM05D007271 ORTHO05D009217 1.8e-62 244.6 407 35.1
HanXRQChr06g0172981 Helianthus annuus HOM05D007271 ORTHO05D009217 4.5e-58 229.9 193 53.9
HanXRQChr06g0172971 Helianthus annuus HOM05D007271 ORTHO05D009217 2.2e-52 211.1 167 61.1
TPR.G9088 Trifolium pratense HOM05D007271 ORTHO05D009217 1.2e-39 168.7 179 50.8
TPR.G9092 Trifolium pratense HOM05D007271 ORTHO05D009217 1.5e-29 135.2 105 59.0
Oeu061072.1 Olea europaea HOM05D007271 ORTHO05D009217 1.2e-21 109.0 97 54.6
TPR.G34495 Trifolium pratense HOM05D007271 ORTHO05D009217 1.7e-20 105.1 109 45.0
COL.COLO4_16884 Corchorus olitorius HOM05D007271 ORTHO05D009217 2.9e-20 104.4 88 58.0
Ca_22492_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 3.0e-17 94.4 129 43.4
TPR.G8637 Trifolium pratense HOM05D007271 ORTHO05D009217 2.5e-16 91.3 70 48.6
COL.COLO4_16886 Corchorus olitorius HOM05D007271 ORTHO05D009217 1.7e-12 78.6 97 43.3
QL12p000442 Quercus lobata HOM05D007271 ORTHO05D009217 5.4e-11 73.6 100 42.0
arahy.Tifrunner.gnm1.ann1.RGNF9W Arachis hypogaea HOM05D007271 ORTHO05D009217 7.8e-10 69.7 103 38.8
arahy.Tifrunner.gnm1.ann1.WVYD0V Arachis hypogaea HOM05D007271 ORTHO05D009217 7.8e-10 69.7 103 38.8
PSO675G5865 Papaver somniferum HOM05D007271 ORTHO05D009217 2.3e-09 68.2 122 33.6
ATR0829G132 Amborella trichopoda HOM05D007271 ORTHO05D009217 3.6e-07 60.8 56 50.0


User provided reference genes

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