Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 1.6e-67 259.2 124 100.0
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 3.0e-66 255.0 124 98.4
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 3.0e-66 255.0 124 98.4
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 1.1e-65 253.1 124 97.6
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.1e-65 253.1 124 97.6
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.1e-65 253.1 124 97.6
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.1e-64 248.8 124 96.0
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 1.0e-58 229.9 125 88.0
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 3.9e-58 228.0 125 87.2
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 5.1e-58 227.6 125 86.4
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 6.7e-58 227.3 125 87.2
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 8.7e-58 226.9 125 87.2
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.1e-57 226.5 125 87.2
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.1e-57 226.5 125 87.2
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 1.9e-57 225.7 125 87.2
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 1.9e-57 225.7 124 84.7
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 3.3e-57 224.9 125 86.4
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 4.3e-57 224.6 125 86.4
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 4.3e-57 224.6 125 85.6
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 86.4
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 88.0
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 84.8
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 84.8
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 85.6
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 5.7e-57 224.2 125 85.6
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 7.4e-57 223.8 125 86.4
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 7.4e-57 223.8 125 85.6
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.3e-56 223.0 125 85.6
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 1.6e-56 222.6 125 86.4
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 4.8e-56 221.1 125 84.0
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 6.2e-56 220.7 125 84.8
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 8.2e-56 220.3 125 85.6
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 8.2e-56 220.3 125 84.8
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 8.2e-56 220.3 125 84.0
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 1.1e-55 219.9 125 84.8
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 1.4e-55 219.5 124 83.9
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 1.4e-55 219.5 124 83.9
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 1.8e-55 219.2 125 83.2
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 2.4e-55 218.8 124 82.3
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 6.9e-55 217.2 124 81.5
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 9.0e-55 216.9 124 79.8
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.2e-54 216.5 125 84.8
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 1.5e-54 216.1 124 82.3
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 2.0e-54 215.7 125 81.6
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 2.6e-54 215.3 124 79.8
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 3.4e-54 214.9 125 83.2
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 3.4e-54 214.9 124 81.5
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 3.4e-54 214.9 125 81.6
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 3.4e-54 214.9 124 80.6
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 5.8e-54 214.2 137 78.1
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 5.8e-54 214.2 124 81.5
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 1.0e-53 213.4 124 78.2
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 1.3e-53 213.0 125 81.6
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.3e-53 213.0 125 79.2
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 82.4
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 2.9e-53 211.8 124 82.3
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 5.0e-53 211.1 124 78.2
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 6.5e-53 210.7 124 80.6
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 6.5e-53 210.7 124 80.6
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 1.1e-52 209.9 124 79.0
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 1.9e-52 209.1 125 80.0
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 1.9e-52 209.1 125 79.2
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 4.2e-52 208.0 125 80.8
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 7.2e-52 207.2 125 79.2
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 7.2e-52 207.2 124 79.8
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 7.2e-52 207.2 125 78.4
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 9.3e-52 206.8 125 78.4
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 2.1e-51 205.7 124 81.5
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 3.5e-51 204.9 132 75.8
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 3.5e-51 204.9 125 77.6
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 4.6e-51 204.5 125 78.4
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 4.6e-51 204.5 124 76.6
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 4.6e-51 204.5 124 76.6
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 6.1e-51 204.1 125 78.4
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 7.9e-51 203.8 149 67.8
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 7.9e-51 203.8 124 75.0
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 1.3e-50 203.0 124 75.0
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 3.9e-50 201.4 171 61.4
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 1.1e-49 199.9 125 77.6
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 2.5e-49 198.7 125 77.6
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 2.5e-49 198.7 124 72.6
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 3.3e-49 198.4 125 75.2
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 9.7e-49 196.8 103 92.2
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 1.3e-48 196.4 108 86.1
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 1.6e-48 196.1 125 73.6
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 2.8e-48 195.3 125 78.4
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 5.9e-46 187.6 125 69.6
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 5.9e-46 187.6 204 52.9
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 1.0e-45 186.8 125 72.8
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.7e-45 186.0 103 85.4
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 2.9e-45 185.3 125 72.0
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 3.8e-45 184.9 125 68.8
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 5.0e-45 184.5 124 69.4
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 1.9e-44 182.6 125 75.2
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 4.2e-44 181.4 103 83.5
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.7e-43 178.7 103 81.6
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 6.1e-43 177.6 122 68.0
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 1.0e-42 176.8 124 69.4
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 1.8e-42 176.0 125 66.4
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.0e-42 175.3 117 70.1
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.0e-42 175.3 117 70.1
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 3.0e-42 175.3 125 70.4
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 8.8e-42 173.7 125 68.8
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 1.1e-41 173.3 125 66.4
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 1.7e-40 169.5 124 64.5
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 1.7e-40 169.5 124 64.5
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 8.2e-40 167.2 120 65.8
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 1.4e-39 166.4 124 63.7
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 2.2e-37 159.1 126 61.9
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 3.2e-36 155.2 119 63.0
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 3.9e-34 148.3 113 60.2
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 1.2e-30 136.7 80 78.8
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 1.2e-30 136.7 80 78.8
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 8.8e-26 120.6 105 61.0
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 4.1e-23 111.7 80 63.8
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 2.7e-22 109.0 80 62.5
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 1.5e-20 103.2 77 62.3
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 1.5e-20 103.2 77 62.3
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.2e-19 100.1 69 69.6
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 6.1e-19 97.8 66 66.7
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.2e-18 94.7 58 77.6
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.2e-18 94.7 58 77.6
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.8e-16 89.0 53 81.1
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 9.1e-15 84.0 78 52.6
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 2.2e-13 79.3 45 80.0
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 2.9e-13 79.0 58 67.2
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 1.1e-12 77.0 44 79.5
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 1.2e-11 73.6 44 81.8
SMO230G0118 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 2.0e-06 56.2 40 62.5


User provided reference genes

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