Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 8.7e-84 313.5 152 100.0
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 2.1e-45 186.0 135 64.4
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 7.9e-45 184.1 135 63.7
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 7.9e-45 184.1 135 63.7
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 2.6e-35 152.5 137 55.5
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 3.3e-35 152.1 137 57.7
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 9.7e-35 150.6 148 52.7
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 3.1e-33 145.6 142 49.3
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-32 142.9 124 57.3
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-32 142.9 107 60.7
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-32 142.9 105 62.9
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.5e-32 141.7 132 52.3
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 5.0e-31 138.3 135 48.1
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 6.5e-31 137.9 135 48.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.9e-30 136.3 149 47.7
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-30 136.3 132 51.5
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 2.5e-30 136.0 126 53.2
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 2.5e-30 136.0 123 53.7
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-30 134.0 126 50.8
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.2e-29 133.7 125 48.8
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-29 133.7 124 52.4
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 1.6e-29 133.3 121 54.5
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.7e-29 132.5 138 50.0
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.7e-29 131.7 107 57.0
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.3e-28 129.4 138 49.3
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.3e-26 123.6 144 43.8
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 3.7e-26 122.1 134 45.5
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 4.8e-26 121.7 108 49.1
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 4.1e-25 118.6 109 49.5
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 7.0e-25 117.9 116 50.9
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 9.1e-25 117.5 121 45.5
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 9.1e-25 117.5 127 41.7
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-24 116.7 113 46.0
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-24 116.7 118 51.7
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-24 116.3 119 52.1
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 2.7e-24 115.9 112 50.0
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 3.5e-24 115.5 101 56.4
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-24 114.8 110 46.4
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-23 113.2 110 48.2
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 2.9e-23 112.5 150 40.0
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 3.8e-23 112.1 110 44.5
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-22 109.8 107 50.5
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-22 109.0 114 45.6
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 3.6e-21 105.5 130 41.5
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 8.0e-21 104.4 114 44.7
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-20 104.0 96 43.8
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-20 104.0 96 43.8
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-20 103.6 111 41.4
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-20 103.6 83 55.4
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-20 103.2 116 41.4
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 6.8e-20 101.3 111 46.8
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.8e-20 100.9 133 39.8
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 1.5e-19 100.1 107 43.9
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 2.6e-19 99.4 104 46.2
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 2.6e-19 99.4 99 49.5
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.4e-19 98.6 104 47.1
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 7.5e-19 97.8 102 46.1
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.7e-18 96.7 104 48.1
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.2e-18 96.3 107 43.9
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 6.3e-18 94.7 73 60.3
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.3e-18 94.4 90 50.0
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-17 94.0 90 50.0
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.1e-17 92.0 111 43.2
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-16 90.5 106 43.4
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-16 90.5 106 44.3
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.7e-16 89.4 123 43.1
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.5e-16 89.0 80 50.0
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 8.6e-15 84.3 107 38.3
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-14 83.2 83 45.8
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 2.1e-13 79.7 144 34.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.6e-13 79.0 88 43.2
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-12 77.0 80 46.2
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-12 77.0 74 52.7
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-12 76.3 76 50.0
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 6.8e-12 74.7 121 36.4
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.9e-12 74.3 74 48.6
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 8.9e-12 74.3 105 41.0
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-11 73.9 75 50.7
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.0e-11 73.2 97 35.1
FAN28G0423 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-11 73.2 68 55.9
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 2.6e-11 72.8 79 45.6
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 5.7e-11 71.6 63 47.6
FAN26G0688 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.5e-11 71.2 59 59.3
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 6.4e-10 68.2 108 34.3
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 8.3e-10 67.8 87 41.4
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 1.8e-09 66.6 106 36.8
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-09 66.6 68 47.1
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 2.4e-09 66.2 114 34.2
FAN23G2658 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-09 65.9 96 37.5
Dinv37210 Davidia involucrata HOM05D000003 ORTHO05D000167 4.1e-09 65.5 106 37.7
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 5.4e-09 65.1 94 37.2
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.4e-09 65.1 75 42.7
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 7.0e-09 64.7 106 34.9
RcHm_v2.0_Chr5g0066061 Rosa chinensis HOM05D009322 ORTHO05D010713 9.2e-09 64.3 99 36.4
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-08 63.2 68 45.6
RcHm_v2.0_Chr1g0333161 Rosa chinensis HOM05D009322 ORTHO05D010713 2.0e-08 63.2 95 36.8
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 2.7e-08 62.8 123 32.5
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 2.7e-08 62.8 134 32.1
AUR62018161 Chenopodium quinoa HOM05D000003 ORTHO05D000167 4.6e-08 62.0 107 29.9
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.6e-08 62.0 68 44.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.6e-08 62.0 128 29.7
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 4.6e-08 62.0 99 35.4
Ah.03g146990 Amaranthus hybridus HOM05D000003 ORTHO05D008897 1.0e-07 60.8 105 36.2
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-07 60.5 65 44.6
RcHm_v2.0_Chr6g0277591 Rosa chinensis HOM05D009322 ORTHO05D010713 1.3e-07 60.5 81 39.5
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.7e-07 60.1 50 60.0
QL12p021712 Quercus lobata HOM05D000003 ORTHO05D000167 1.7e-07 60.1 123 30.9
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-07 60.1 73 43.8
Dinv24219 Davidia involucrata HOM05D000003 ORTHO05D011454 2.3e-07 59.7 82 41.5
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 2.3e-07 59.7 58 51.7
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 2.3e-07 59.7 80 41.2
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-07 59.7 71 47.9
Ciclev10027161m.g Citrus clementina HOM05D000003 ORTHO05D000167 3.0e-07 59.3 122 32.0
RcHm_v2.0_Chr7g0203591 Rosa chinensis HOM05D009322 ORTHO05D010713 3.0e-07 59.3 102 30.4
FAN18G4526 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.9e-07 58.9 60 51.7
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.0e-07 58.5 102 30.4
FvH4_5g01582 Fragaria vesca HOM05D000003 ORTHO05D006737 5.0e-07 58.5 60 48.3
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 6.6e-07 58.2 94 31.9
FAN19G1976 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.6e-07 58.2 50 60.0
RcHm_v2.0_Chr5g0031531 Rosa chinensis HOM05D009322 ORTHO05D010713 6.6e-07 58.2 81 38.3
RcHm_v2.0_Chr6g0254571 Rosa chinensis HOM05D009322 ORTHO05D010713 6.6e-07 58.2 102 30.4
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 6.6e-07 58.2 121 32.2
FvH4_6g25791 Fragaria vesca HOM05D000003 ORTHO05D000022 8.6e-07 57.8 111 28.8
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.6e-07 57.8 67 44.8
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 1.1e-06 57.4 104 33.7
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-06 57.4 79 41.8
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.1e-06 57.4 61 50.8
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-06 57.4 70 45.7
QL04p002496 Quercus lobata HOM05D014996 ORTHO05D000022 1.1e-06 57.4 86 34.9
QL12p007586 Quercus lobata HOM05D000003 ORTHO05D000167 1.1e-06 57.4 108 31.5
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.1e-06 57.4 103 35.0
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.1e-06 57.4 107 34.6
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 1.5e-06 57.0 62 48.4
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 1.5e-06 57.0 56 55.4
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 56.6 104 37.5
FvH4_1g27751 Fragaria vesca HOM05D013595 ORTHO05D010662 1.9e-06 56.6 88 33.0
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 2.5e-06 56.2 44 59.1
CANSAT21G1499 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-06 55.8 123 30.1
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-06 55.8 86 38.4
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 3.3e-06 55.8 113 31.0
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 3.3e-06 55.8 80 35.0
CANSAT21G1904 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-06 55.5 99 37.4
Nitab4.5_0000780g0130 Nicotiana tabacum HOM05D012456 ORTHO05D000022 4.3e-06 55.5 104 32.7
QL02p017925 Quercus lobata HOM05D000003 ORTHO05D000022 4.3e-06 55.5 72 38.9
QL08p037725 Quercus lobata HOM05D000003 ORTHO05D000167 4.3e-06 55.5 91 34.1
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 5.6e-06 55.1 111 29.7
RcHm_v2.0_Chr2g0109541 Rosa chinensis HOM05D009322 ORTHO05D010713 5.6e-06 55.1 108 30.6
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 5.6e-06 55.1 80 35.0
CANSAT21G0849 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-06 54.7 95 30.5
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-06 54.7 105 33.3
TAR331G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 7.3e-06 54.7 105 30.5
Actinidia34033 Actinidia chinensis HOM05D000003 ORTHO05D000167 9.5e-06 54.3 118 28.0
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 9.5e-06 54.3 101 32.7
FAN28G1122 Fragaria x ananassa HOM05D013595 ORTHO05D010662 9.5e-06 54.3 112 28.6
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 9.5e-06 54.3 113 26.5


User provided reference genes

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