Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 0.0e+00 1258.0 694 100.0
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.6e-284 981.9 696 78.4
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.1e-282 976.5 696 78.4
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.9e-279 965.7 696 77.6
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.4e-276 954.9 694 77.4
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.0e-236 822.8 691 69.8
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.0e-195 687.6 754 55.6
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 9.5e-186 654.4 691 59.0
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 4.6e-140 502.7 756 45.4
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.5e-135 487.6 734 45.0
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 2.7e-132 476.9 786 43.4
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.4e-128 463.8 746 44.1
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.0e-126 458.4 801 41.8
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 7.1e-125 452.2 752 41.6
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.6e-124 449.5 758 40.2
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 1.3e-123 448.0 724 43.1
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 4.3e-122 443.0 769 41.5
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.3e-121 441.4 755 42.1
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 9.0e-120 435.3 743 40.4
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.6e-119 433.7 760 41.2
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.3e-118 431.4 743 42.7
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 3.8e-118 429.9 699 43.5
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 6.5e-118 429.1 716 41.8
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 6.1e-116 422.5 737 40.8
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 2.3e-115 420.6 771 39.7
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 8.8e-115 418.7 730 40.4
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 2.8e-113 413.7 752 39.9
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.4e-112 411.4 752 40.0
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 5.3e-112 409.5 756 39.8
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 5.3e-112 409.5 773 37.8
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.0e-110 405.2 736 40.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 5.0e-110 402.9 540 47.0
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 8.5e-110 402.1 779 38.6
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 1.2e-108 398.3 672 42.3
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 2.7e-108 397.1 728 39.8
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 2.7e-108 397.1 728 39.8
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 3.0e-107 393.7 739 40.2
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.1e-106 391.7 722 40.0
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 2.5e-101 374.0 929 34.4
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 5.5e-101 372.9 718 38.9
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 7.2e-101 372.5 736 37.2
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 4.7e-100 369.8 568 40.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 5.2e-99 366.3 729 37.6
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.1e-98 365.2 679 38.7
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 5.3e-96 356.3 681 38.9
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.2e-95 355.1 742 38.0
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 3.8e-94 350.1 603 39.8
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.1e-93 348.6 707 36.4
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.5e-93 348.2 715 37.2
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 1.9e-93 347.8 589 39.9
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 1.9e-93 347.8 589 39.9
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 1.9e-93 347.8 589 39.9
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.6e-92 344.7 732 35.9
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 8.0e-92 342.4 874 37.0
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 2.3e-91 340.9 829 35.5
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 8.8e-91 339.0 732 34.8
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.6e-90 337.4 606 38.6
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 4.4e-90 336.7 747 35.6
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 7.5e-90 335.9 606 38.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 9.7e-90 335.5 759 35.4
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 2.8e-89 334.0 584 39.2
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 4.1e-88 330.1 501 41.3
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 7.0e-88 329.3 613 38.7
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 5.9e-87 326.2 742 34.9
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 2.2e-86 324.3 650 35.7
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 2.9e-86 323.9 595 39.0
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 5.0e-86 323.2 675 36.6
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 1.5e-85 321.6 650 35.7
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 5.5e-85 319.7 686 36.2
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 7.2e-85 319.3 703 37.1
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 8.0e-84 315.8 757 34.5
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.8e-83 314.7 693 36.4
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 8.8e-83 312.4 731 33.0
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 3.4e-82 310.5 591 37.1
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.1e-80 305.4 327 55.4
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 3.1e-80 303.9 586 37.4
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 5.9e-79 299.7 313 55.3
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.9e-77 294.7 763 32.6
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 4.2e-77 293.5 672 35.3
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 7.2e-77 292.7 568 36.6
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.3e-73 282.0 733 32.1
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.1e-72 278.9 717 35.1
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 9.2e-72 275.8 569 36.2
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.1e-64 252.3 764 30.8
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 5.0e-62 243.4 644 31.7
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 7.0e-56 223.0 268 45.9
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 3.3e-53 214.2 665 31.6
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 1.6e-52 211.8 277 44.0
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 6.2e-52 209.9 229 51.1
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.6e-50 204.5 404 36.9
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.0e-46 192.6 504 30.8
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 2.8e-36 157.9 665 25.9
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 1.8e-35 155.2 152 58.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 8.4e-33 146.4 523 27.9
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.2e-31 142.5 455 30.3
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 7.8e-31 139.8 405 30.4
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.0e-30 139.4 251 37.1
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 2.0e-26 125.2 155 49.0
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 3.4e-26 124.4 200 42.0
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 4.5e-26 124.0 110 60.9
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 9.9e-26 122.9 159 47.8
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.9e-25 121.3 133 54.9
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.7e-23 114.8 371 30.2
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 7.9e-23 113.2 325 33.8
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 5.1e-22 110.5 276 31.5
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 7.4e-21 106.7 346 30.6
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 1.4e-19 102.4 615 22.6
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 6.7e-14 83.6 90 50.0
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 3.1e-11 74.7 111 39.6
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 4.9e-09 67.4 185 26.5
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.9e-08 65.5 279 26.2
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.0e-06 59.7 196 34.2
Os02g0128300 Oryza sativa ssp. japonica HOM05D006140 ORTHO05D007834 2.3e-06 58.5 232 25.4


User provided reference genes

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