Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212321 Rosa chinensis HOM05D001070 ORTHO05D005132 3.7e-296 1020.8 511 100.0
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 1.1e-143 514.2 501 59.7
Hma1.2p1_0096F.1_g047620 Hydrangea macrophylla HOM05D001070 ORTHO05D005132 8.9e-141 504.6 455 61.1
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.4e-138 497.3 515 55.5
Solyc00g500042.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 2.4e-133 479.9 511 55.0
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 2.5e-127 459.9 510 54.3
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 4.5e-108 396.0 509 49.7
PSO357G0618 Papaver somniferum HOM05D001070 ORTHO05D005132 1.7e-107 394.0 509 49.5
EL10As1g23055 Beta vulgaris HOM05D001070 ORTHO05D005132 4.9e-107 392.5 524 48.9
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.6e-105 387.5 519 48.6
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 8.2e-102 375.2 506 48.8
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 5.9e-100 369.0 520 48.5
HanXRQChr15g0465411 Helianthus annuus HOM05D001070 ORTHO05D005132 5.9e-100 369.0 520 48.5
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 5.9e-100 369.0 520 48.5
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 5.9e-100 369.0 520 48.5
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.3e-93 345.9 328 60.4
EL10Ac1g01959 Beta vulgaris HOM05D001070 ORTHO05D005132 6.9e-93 345.5 433 49.9
ClCG11G009250 Citrullus lanatus HOM05D001070 ORTHO05D005132 8.2e-86 322.0 383 52.2
HanXRQChr03g0087621 Helianthus annuus HOM05D001070 ORTHO05D005132 2.4e-85 320.5 424 49.5
CAN.G1139.17 Capsicum annuum HOM05D001070 ORTHO05D005132 2.2e-83 313.9 341 55.7
Lj2P1238T100 Lonicera japonica HOM05D001070 ORTHO05D005132 2.2e-83 313.9 506 43.1
BcaB03g16407 Brassica carinata HOM05D001070 ORTHO05D005132 3.0e-80 303.5 500 42.8
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 9.7e-79 298.5 467 45.0
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 9.7e-79 298.5 467 45.0
BolSC45t60903H Brassica oleracea HOM05D001070 ORTHO05D005132 1.3e-75 288.1 467 44.1
HanXRQChr00c0336g0573711 Helianthus annuus HOM05D001070 ORTHO05D005132 1.7e-75 287.7 424 46.2
Peaxi162Scf00030g02113 Petunia axillaris HOM05D001070 ORTHO05D005132 1.5e-71 274.6 429 45.9
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 2.7e-68 263.8 504 38.5
Nn1g08629 Nelumbo nucifera HOM05D001070 ORTHO05D005132 1.0e-64 251.9 262 58.0
GSVIVG01005309001 Vitis vinifera HOM05D001070 ORTHO05D005132 3.7e-62 243.4 480 37.7
Migut.D01247 Erythranthe guttata HOM05D001070 ORTHO05D005132 3.5e-60 236.9 348 46.0
Hund30366 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.9e-58 231.1 398 41.2
Hund08794 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund12717 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund12844 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund23969 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund27677 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund27830 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund27882 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28329 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28437 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28449 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28598 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28612 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28879 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund30119 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.3e-58 230.3 398 41.2
Hund28938 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28947 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28952 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28953 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28962 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund28978 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29025 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29178 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29187 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29245 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29246 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29252 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29253 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29274 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29278 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29282 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29286 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29287 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29315 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29440 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29712 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund29819 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund30035 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund30040 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Hund30176 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.2e-58 229.9 383 41.8
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 1.2e-57 228.4 387 42.4
Lju5009P0T28 Lonicera japonica HOM05D001070 ORTHO05D005132 2.1e-57 227.6 369 40.9
BolC2t10603H Brassica oleracea HOM05D001070 ORTHO05D005132 8.3e-54 215.7 395 40.5
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-53 214.5 259 52.1
HanXRQChr09g0258471 Helianthus annuus HOM05D001070 ORTHO05D005132 7.0e-53 212.6 300 46.7
HanXRQChr15g0465481 Helianthus annuus HOM05D001070 ORTHO05D005132 7.0e-53 212.6 300 46.7
Hund28911 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-51 208.4 381 40.4
HanXRQChr08g0222871 Helianthus annuus HOM05D001070 ORTHO05D005132 5.0e-51 206.5 221 55.7
Gohir.A09G045792 Gossypium hirsutum HOM05D001070 ORTHO05D005132 9.5e-50 202.2 243 49.0
MBI09_g14156_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 6.8e-48 196.1 228 55.7
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.1e-45 188.7 335 39.7
Hund29754 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.1e-45 188.7 335 39.7
Hund28853 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.6e-41 173.7 381 37.3
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.7e-38 164.9 308 38.3
Nitab4.5_0007104g0080 Nicotiana tabacum HOM05D001070 ORTHO05D005132 2.4e-37 161.0 172 51.2
BolSC35t60686H Brassica oleracea HOM05D001070 ORTHO05D005132 1.3e-35 155.2 277 39.4
MBI10_g47595_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 7.3e-34 149.4 202 47.0
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 8.1e-33 146.0 221 45.2
Gohir.A13G086425 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.8e-32 144.8 114 62.3
Solyc07g041680.2 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.5e-31 141.7 120 60.8
GSVIVG01029921001 Vitis vinifera HOM05D001070 ORTHO05D005132 4.9e-30 136.7 151 55.0
Potri.005G150450 Populus trichocarpa HOM05D001070 ORTHO05D005132 8.3e-30 136.0 136 58.1
Gorai.004G136300 Gossypium raimondii HOM05D001070 ORTHO05D005132 2.8e-25 120.9 354 30.2
MBI08_g41352_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 1.4e-24 118.6 214 42.5
Gohir.D08G133232 Gossypium hirsutum HOM05D001070 ORTHO05D005132 2.4e-24 117.9 354 29.4
Hund28589 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-24 117.9 150 48.0
Solyc11g021260.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 4.0e-24 117.1 292 33.9
C07p33480 Brassica napus HOM05D001070 ORTHO05D005132 1.2e-23 115.5 154 46.1
Nitab4.5_0012234g0050 Nicotiana tabacum HOM05D001070 ORTHO05D005132 3.4e-23 114.0 102 56.9
Gorai.010G136000 Gossypium raimondii HOM05D001070 ORTHO05D005132 4.4e-23 113.6 97 61.9
arahy.Tifrunner.gnm1.ann1.B1X1LX Arachis hypogaea HOM05D001070 ORTHO05D005132 2.2e-22 111.3 256 37.1
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.7e-19 101.7 110 54.5
HanXRQChr00c0703g0576911 Helianthus annuus HOM05D001070 ORTHO05D005132 3.0e-19 100.9 153 44.4
Gorai.011G078900 Gossypium raimondii HOM05D001070 ORTHO05D005132 2.5e-18 97.8 128 45.3
MBI08_g37092_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 1.6e-17 95.1 89 56.2
Hund28588 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.6e-17 94.0 162 38.3
Hund29110 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.6e-17 94.0 162 38.3
Lj9P89T23 Lonicera japonica HOM05D001070 ORTHO05D005132 6.9e-16 89.7 120 50.0
Nn3g17667 Nelumbo nucifera HOM05D000388 ORTHO05D000473 1.5e-15 88.6 63 69.8
Solyc01g009550.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.5e-15 88.6 86 59.3
Peaxi162Scf00030g02112 Petunia axillaris HOM05D001070 ORTHO05D005132 2.6e-15 87.8 53 71.7
Gorai.012G102100 Gossypium raimondii HOM05D001070 ORTHO05D005132 9.9e-15 85.9 129 41.9
Medtr1g037160 Medicago truncatula HOM05D001070 ORTHO05D005132 1.3e-14 85.5 177 40.1
Nitab4.5_0006502g0060 Nicotiana tabacum HOM05D001070 ORTHO05D005132 4.9e-14 83.6 203 31.5
Solyc02g011820.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 8.4e-14 82.8 147 39.5
Medtr1g041530 Medicago truncatula HOM05D001070 ORTHO05D005132 3.2e-13 80.9 90 53.3
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.1e-13 79.7 51 66.7
HanXRQChr13g0413611 Helianthus annuus HOM05D001070 ORTHO05D005132 1.2e-12 79.0 67 61.2
Hund31094 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.1e-12 78.2 111 44.1
PSO063G4510 Papaver somniferum HOM05D001070 ORTHO05D005132 6.0e-12 76.6 60 61.7
Gorai.002G064200 Gossypium raimondii HOM05D001070 ORTHO05D005132 1.0e-11 75.9 120 40.8
Hund20483 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.7e-11 75.1 69 56.5
BolC9t56920H Brassica oleracea HOM05D001070 ORTHO05D031339 6.6e-11 73.2 82 52.4
ClCG11G009240 Citrullus lanatus HOM05D001070 ORTHO05D005132 8.7e-11 72.8 48 72.9
Glyma.18G155800 Glycine max HOM05D001070 ORTHO05D005132 8.7e-11 72.8 66 53.0
Gohir.D11G334350 Gossypium hirsutum HOM05D001070 ORTHO05D010233 1.9e-10 71.6 87 50.6
Potri.010G052900 Populus trichocarpa HOM05D001070 ORTHO05D005132 9.6e-10 69.3 82 56.1
BolSC29t60512H Brassica oleracea HOM05D001070 ORTHO05D005132 3.6e-09 67.4 51 60.8
BolSC37t60799H Brassica oleracea HOM05D001070 ORTHO05D005132 3.6e-09 67.4 51 60.8
C02p28800 Brassica napus HOM05D001070 ORTHO05D005132 6.2e-09 66.6 51 60.8
Nitab4.5_0010788g0060 Nicotiana tabacum HOM05D001070 ORTHO05D028533 6.2e-09 66.6 51 58.8
Peaxi162Scf00080g00521 Petunia axillaris HOM05D001070 ORTHO05D005132 4.0e-08 63.9 95 41.1
Solyc02g011830.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 9.0e-08 62.8 69 50.7
TPR.G3560 Trifolium pratense HOM05D001070 ORTHO05D005132 9.0e-08 62.8 77 50.6
Nn029s41577 Nelumbo nucifera HOM05D001070 ORTHO05D005132 2.6e-07 61.2 38 68.4
GSVIVG01000801001 Vitis vinifera HOM05D001070 ORTHO05D005132 2.6e-07 61.2 51 64.7
Solyc10g047390.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 9.9e-07 59.3 84 44.0
Gorai.002G047700 Gossypium raimondii HOM05D001070 ORTHO05D005132 4.9e-06 57.0 209 32.5


User provided reference genes

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