Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 6.0e-100 367.5 180 100.0
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.6e-97 359.4 180 97.8
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.6e-97 359.4 180 97.8
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.8e-97 357.8 180 97.2
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 4.6e-92 341.3 180 90.0
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 4.6e-92 341.3 180 89.4
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 6.0e-92 340.9 180 90.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.8e-91 339.3 180 90.6
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.8e-91 339.3 179 89.9
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.0e-91 338.6 180 90.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 3.9e-91 338.2 180 90.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.1e-90 336.7 180 90.0
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.3e-90 335.1 180 88.9
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 86.7
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 87.8
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 7.4e-90 334.0 179 89.9
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 87.2
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.7
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.7
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 86.7
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 87.2
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.7
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 88.3
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 87.8
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 87.8
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 86.7
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 87.8
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.7
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 87.8
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.4e-88 328.9 181 86.7
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 87.8
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 85.0
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 84.4
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 85.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 84.4
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 84.4
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 85.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 87.2
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 85.6
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 85.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 84.4
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 85.0
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 1.3e-86 323.2 180 84.4
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 1.3e-86 323.2 180 84.4
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 84.4
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 2.2e-86 322.4 180 84.4
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 178 84.8
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.9
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 84.4
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.3
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.9e-86 321.2 178 84.8
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 82.8
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 83.9
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 82.8
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 83.9
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 83.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 81.7
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 3.2e-85 318.5 199 76.9
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.8
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.7
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 81.1
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 80.6
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.3e-83 313.2 178 83.7
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 81.7
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 79.4
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.1e-82 310.1 180 80.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.5e-82 308.9 181 82.3
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 2.5e-82 308.9 178 80.3
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 6.2e-81 304.3 187 77.0
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 3.1e-80 302.0 165 85.5
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.5e-79 299.7 160 90.6
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.5e-79 299.7 206 72.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 2.6e-79 298.9 203 71.4
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 7.6e-79 297.4 180 78.3
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.0e-78 297.0 159 88.1
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.9e-77 292.7 159 88.7
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.1e-76 289.3 161 83.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.0e-75 287.0 178 76.4
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.8e-75 286.2 174 78.2
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 5.1e-75 284.6 160 83.1
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 8.7e-75 283.9 175 77.1
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 5.7e-74 281.2 172 82.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 9.6e-74 280.4 156 82.7
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 4.8e-73 278.1 180 74.4
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 8.2e-73 277.3 162 79.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.4e-72 276.6 177 72.3
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 2.4e-72 275.8 160 79.4
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.5e-71 273.1 167 78.4
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.5e-71 271.6 175 69.1
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.1e-69 266.9 164 76.2
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 3.6e-68 261.9 153 81.0
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.0e-67 258.8 218 63.3
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 5.1e-67 258.1 175 66.9
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.1e-66 256.9 139 86.3
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 4.8e-65 251.5 175 65.1
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.5e-63 246.5 139 81.3
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 7.2e-61 237.7 181 67.4
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 3.9e-59 231.9 171 61.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.4e-53 210.7 114 82.5
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 3.6e-52 208.8 121 79.3
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.1e-50 203.8 174 53.4
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.7e-49 199.9 117 76.1
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.2e-46 189.5 185 57.3
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.2e-46 189.5 185 57.3
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.9e-45 186.4 130 66.9
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.5e-39 165.6 92 78.3
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 1.9e-37 159.8 113 70.8
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 9.4e-37 157.5 174 44.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.6e-36 156.8 96 76.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 6.1e-36 154.8 176 43.2
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.8e-35 153.3 177 49.2
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 5.2e-35 151.8 116 62.9
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 7.5e-34 147.9 91 74.7
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.8e-27 124.8 80 71.2
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.1e-24 117.5 71 70.4
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 3.5e-23 112.5 99 61.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 7.3e-21 104.8 65 76.9
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 4.7e-20 102.1 100 61.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 8.9e-19 97.8 56 87.5
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.5e-18 97.1 50 92.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.4e-18 95.9 56 76.8
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.4e-16 90.5 46 91.3
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.5e-07 59.3 45 66.7
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 6.0e-07 58.5 57 52.6


User provided reference genes

Program Settings