Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0212191 Rosa chinensis HOM05D002269 ORTHO05D002421 1.4e-19 98.6 50 100.0
MD03G1162900 Malus domestica HOM05D002269 ORTHO05D002421 1.7e-15 85.1 47 95.7
MD11G1178900 Malus domestica HOM05D002269 ORTHO05D002421 4.1e-14 80.5 47 91.5
Prupe.1G100200 Prunus persica HOM05D002269 ORTHO05D002421 4.1e-14 80.5 47 89.4
FAN04G1675 Fragaria x ananassa HOM05D002269 ORTHO05D002421 6.9e-14 79.7 46 89.1
QL04p055157 Quercus lobata HOM05D002269 ORTHO05D002421 9.1e-14 79.3 45 80.0
Prupe.6G151700 Prunus persica HOM05D002269 ORTHO05D002421 1.5e-13 78.6 47 87.2
Eucgr.D02638 Eucalyptus grandis HOM05D002269 ORTHO05D002421 2.0e-13 78.2 46 84.8
FAN18G0490 Fragaria x ananassa HOM05D002269 ORTHO05D002421 3.4e-13 77.4 46 87.0
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.0e-12 75.9 46 84.8
vmacro00264 Vaccinium macrocarpon HOM05D002269 ORTHO05D002421 1.0e-12 75.9 48 77.1
Rhsim02G0002300 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.7e-12 75.1 48 79.2
Rhsim11G0031700 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.7e-12 75.1 48 79.2
Haze_08132 Corylus avellana HOM05D002269 ORTHO05D002421 2.9e-12 74.3 46 82.6
Nn1g01855 Nelumbo nucifera HOM05D002269 ORTHO05D002421 3.8e-12 73.9 46 76.1
Manes.03G078116 Manihot esculenta HOM05D002269 ORTHO05D002421 5.0e-12 73.6 45 82.2
PGR031G3026 Punica granatum HOM05D002269 ORTHO05D002421 5.0e-12 73.6 46 80.4
Rhsim06G0207900 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.1e-11 72.4 48 77.1
Thecc.09G239300 Theobroma cacao HOM05D002269 ORTHO05D002421 1.9e-11 71.6 44 77.3
Duzib168G0037 Durio zibethinus HOM05D002269 ORTHO05D002421 2.5e-11 71.2 46 73.9
Nitab4.5_0002897g0010 Nicotiana tabacum HOM05D002269 ORTHO05D002421 3.2e-11 70.9 46 73.9
CSS0035166 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 5.5e-11 70.1 46 73.9
CiPaw.12G069300 Carya illinoinensis HOM05D002269 ORTHO05D002421 5.5e-11 70.1 47 72.3
Glyma.01G012300 Glycine max HOM05D002269 ORTHO05D002421 5.5e-11 70.1 47 74.5
CSS0004410 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.2e-10 68.9 45 75.6
CSS0015281 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.2e-10 68.9 45 75.6
Nitab4.5_0006977g0020 Nicotiana tabacum HOM05D002269 ORTHO05D002421 1.6e-10 68.6 48 75.0
Phvul.002G135400 Phaseolus vulgaris HOM05D002269 ORTHO05D002421 1.6e-10 68.6 47 74.5
THA.LOC104821912 Tarenaya hassleriana HOM05D002269 ORTHO05D002421 1.6e-10 68.6 46 73.9
TWI60G0852 Tripterygium wilfordii HOM05D002269 ORTHO05D002421 1.6e-10 68.6 46 73.9
Glyma.09G209300 Glycine max HOM05D002269 ORTHO05D002421 2.1e-10 68.2 47 74.5
Potri.003G098000 Populus trichocarpa HOM05D002269 ORTHO05D002421 2.1e-10 68.2 47 76.6
Aqoxy2G02906 Aquilegia oxysepala HOM05D002269 ORTHO05D002421 4.7e-10 67.0 48 70.8
arahy.Tifrunner.gnm1.ann1.988I9X Arachis hypogaea HOM05D002269 ORTHO05D002421 4.7e-10 67.0 45 77.8
arahy.Tifrunner.gnm1.ann1.E7GDE8 Arachis hypogaea HOM05D002269 ORTHO05D002421 4.7e-10 67.0 45 77.8
Migut.E01321 Erythranthe guttata HOM05D002269 ORTHO05D002421 4.7e-10 67.0 46 73.9
Sabra03G0066400 Salix brachista HOM05D002269 ORTHO05D002421 4.7e-10 67.0 45 77.8
CSS0042614 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 6.1e-10 66.6 45 73.3
PGSC0003DMG402009322 Solanum tuberosum HOM05D002269 ORTHO05D002421 1.0e-09 65.9 46 71.7
EL10Ac5g11998 Beta vulgaris HOM05D002269 ORTHO05D002421 1.4e-09 65.5 45 73.3
ClCG09G011580 Citrullus lanatus HOM05D002269 ORTHO05D002421 1.4e-09 65.5 46 69.6
CSS0022027 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.8e-09 65.1 45 73.3
Haze_12063 Corylus avellana HOM05D002269 ORTHO05D002421 1.8e-09 65.1 40 82.5
Solyc08g076120.3 Solanum lycopersicum HOM05D002269 ORTHO05D002421 1.8e-09 65.1 46 69.6
Ca_25162_v3 Cicer arietinum L. HOM05D002269 ORTHO05D002421 3.0e-09 64.3 45 75.6
Glyma.04G121601 Glycine max HOM05D002269 ORTHO05D002421 3.0e-09 64.3 44 72.7
Gohir.D07G127100 Gossypium hirsutum HOM05D002269 ORTHO05D002421 3.0e-09 64.3 46 69.6
TAR675G0001 Trochodendron aralioides HOM05D002269 ORTHO05D002421 3.0e-09 64.3 45 71.1
TAR675G0002 Trochodendron aralioides HOM05D002269 ORTHO05D002421 3.0e-09 64.3 45 71.1
BcaB05g24362 Brassica carinata HOM05D002269 ORTHO05D002421 3.9e-09 63.9 44 72.7
Oeu017090.1 Olea europaea HOM05D002269 ORTHO05D002421 5.1e-09 63.5 44 70.5
Psat2g139840 Pisum sativum HOM05D002269 ORTHO05D002421 5.1e-09 63.5 47 74.5
Sp5g23360 Schrenkiella parvula HOM05D002269 ORTHO05D002421 6.7e-09 63.2 46 69.6
Lalb_Chr09g0325401 Lupinus albus HOM05D002269 ORTHO05D002421 8.8e-09 62.8 45 73.3
Medtr5g028010 Medicago truncatula HOM05D002269 ORTHO05D002421 8.8e-09 62.8 45 73.3
PSO675G7689 Papaver somniferum HOM05D002269 ORTHO05D002421 8.8e-09 62.8 48 62.5
Sed0000806 Sechium edule HOM05D002269 ORTHO05D002421 8.8e-09 62.8 46 67.4
BcaC03g14935 Brassica carinata HOM05D002269 ORTHO05D002421 1.5e-08 62.0 47 66.0
C02p24310 Brassica napus HOM05D002269 ORTHO05D002421 1.5e-08 62.0 47 66.0
BolC2t08543H Brassica oleracea HOM05D002269 ORTHO05D002421 1.5e-08 62.0 47 66.0
Ciclev10002744m.g Citrus clementina HOM05D002269 ORTHO05D002421 1.5e-08 62.0 47 68.1
A02p14860 Brassica napus HOM05D002269 ORTHO05D002421 2.0e-08 61.6 47 66.0
BraA02t06553Z Brassica rapa HOM05D002269 ORTHO05D002421 2.0e-08 61.6 47 66.0
TAR636G2740 Trochodendron aralioides HOM05D002269 ORTHO05D002421 2.6e-08 61.2 45 68.9
Thhalv10019265m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 4.4e-08 60.5 46 65.2
Lj2g0001997 Lotus japonicus HOM05D002269 ORTHO05D002421 5.7e-08 60.1 47 63.8
PSO675G4609 Papaver somniferum HOM05D002269 ORTHO05D002421 5.7e-08 60.1 48 62.5
Hund14382 Selenicereus undatus HOM05D002269 ORTHO05D002421 5.7e-08 60.1 45 71.1
AL2G27140 Arabidopsis lyrata HOM05D002269 ORTHO05D002421 7.4e-08 59.7 45 64.4
Zm00001eb430080 Zea mays HOM05D002269 ORTHO05D002421 7.4e-08 59.7 46 63.0
Lj2A761T4 Lonicera japonica HOM05D002269 ORTHO05D002421 9.7e-08 59.3 46 69.6
Zm00001eb072050 Zea mays HOM05D002269 ORTHO05D002421 9.7e-08 59.3 46 63.0
Carub.0002s1480 Capsella rubella HOM05D002269 ORTHO05D002421 1.3e-07 58.9 46 65.2
Os04g0596400 Oryza sativa ssp. japonica HOM05D002269 ORTHO05D002421 1.3e-07 58.9 46 65.2
PSO170G1543 Papaver somniferum HOM05D002269 ORTHO05D002421 1.3e-07 58.9 48 60.4
PSO017G3942 Papaver somniferum HOM05D002269 ORTHO05D002421 1.7e-07 58.5 48 60.4
CARHR060990 Cardamine hirsuta HOM05D002269 ORTHO05D002421 2.8e-07 57.8 46 58.7
AT1G68310 Arabidopsis thaliana HOM05D002269 ORTHO05D002421 6.3e-07 56.6 46 63.0
SEGI_25839 Sequoiadendron giganteum HOM05D002269 ORTHO05D002421 1.1e-06 55.8 46 58.7
ECA246G1284 Erigeron canadensis HOM05D002269 ORTHO05D002421 7.0e-06 53.1 48 60.4
ECA246G1747 Erigeron canadensis HOM05D002269 ORTHO05D002421 7.0e-06 53.1 48 60.4
Thhalv10012130m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 9.1e-06 52.8 42 57.1


User provided reference genes

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