Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 6.2e-206 720.7 399 100.0
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.9e-183 646.0 401 90.8
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.7e-143 511.5 397 64.5
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.0e-135 486.5 399 61.4
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.7e-134 482.3 399 60.9
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.6e-132 476.9 397 60.2
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.3e-131 473.8 394 59.9
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 4.1e-109 399.1 417 51.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 3.9e-91 339.3 419 45.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 5.1e-83 312.4 413 42.9
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.7e-78 297.4 433 40.2
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 8.4e-78 295.0 398 43.2
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 2.4e-77 293.5 401 42.1
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 3.2e-77 293.1 398 40.7
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 7.1e-77 292.0 404 41.6
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 6.0e-76 288.9 425 40.5
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 4.3e-74 282.7 414 40.6
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 7.4e-74 282.0 397 40.1
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 9.6e-74 281.6 398 42.7
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 9.6e-74 281.6 464 38.1
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.8e-72 277.3 425 38.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.4e-72 276.9 292 49.0
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.7e-70 270.8 412 38.8
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.2e-70 270.4 405 39.3
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.1e-68 263.8 397 37.3
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 6.0e-68 262.3 411 38.2
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 6.7e-67 258.8 413 36.1
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.1e-66 258.1 404 41.3
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 7.4e-66 255.4 534 33.5
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 7.4e-66 255.4 389 39.3
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.6e-65 254.2 415 36.9
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-64 251.5 391 35.0
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.1e-64 250.0 411 36.7
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-64 250.0 391 37.3
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 6.9e-64 248.8 471 35.0
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.6e-63 246.9 218 54.1
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.6e-63 246.9 385 38.7
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 7.6e-63 245.4 428 38.1
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.3e-62 244.6 405 35.1
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.7e-62 244.2 451 35.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 2.9e-62 243.4 405 40.7
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 6.5e-62 242.3 389 38.3
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.3e-61 238.4 197 55.3
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.6e-60 237.7 387 37.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.1e-60 237.3 405 37.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.5e-60 236.5 401 37.2
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 4.6e-60 236.1 391 37.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 1.3e-59 234.6 412 36.9
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-59 234.6 393 34.6
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.8e-59 234.2 389 37.8
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 2.3e-59 233.8 395 36.2
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.1e-59 232.6 395 36.5
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-58 230.7 448 31.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-58 230.3 425 33.4
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.3e-58 229.9 389 35.2
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 9.6e-58 228.4 387 36.4
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.6e-57 227.6 393 39.4
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 4.8e-57 226.1 398 33.7
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 6.3e-57 225.7 176 58.0
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 8.2e-57 225.3 382 36.4
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-56 224.6 393 37.7
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.4e-56 223.8 393 34.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 6.9e-56 222.2 389 34.7
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.0e-55 220.7 392 32.9
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.6e-55 220.3 379 36.4
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 7.6e-55 218.8 424 31.6
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 2.9e-54 216.9 382 36.4
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.1e-53 214.9 354 39.3
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-53 214.9 387 36.4
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-53 213.0 279 41.6
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.2e-52 211.5 408 34.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 6.1e-52 209.1 405 35.3
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.0e-51 208.4 471 30.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-50 204.5 283 41.3
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.9e-50 204.1 376 34.0
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.3e-50 203.0 388 33.8
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 4.8e-49 199.5 175 52.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-48 198.0 379 31.7
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 9.0e-48 195.3 352 33.5
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.2e-47 194.9 194 51.5
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 3.4e-47 193.4 194 47.9
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.4e-47 193.4 190 51.1
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 7.7e-47 192.2 458 28.2
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.0e-46 191.8 176 51.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.2e-45 186.8 201 46.8
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 9.4e-45 185.3 244 40.6
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-44 184.9 291 38.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.0e-43 181.8 208 45.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 2.3e-43 180.6 200 42.0
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 5.1e-43 179.5 196 44.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 5.1e-43 179.5 191 45.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 8.8e-43 178.7 261 40.2
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.1e-42 178.3 396 31.3
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 2.0e-42 177.6 195 45.6
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-42 177.6 383 32.9
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 3.3e-42 176.8 371 30.7
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 7.4e-42 175.6 202 46.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.3e-41 174.9 328 36.6
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.8e-41 173.7 194 46.4
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.7e-41 173.3 178 46.1
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.4e-40 171.4 192 47.9
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.8e-40 171.0 156 55.8
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 9.1e-40 168.7 200 41.5
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 9.1e-40 168.7 195 43.6
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.2e-39 168.3 384 32.8
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.5e-39 167.9 184 46.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.6e-39 167.2 197 43.7
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.9e-39 166.0 195 44.6
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-38 165.2 223 43.5
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-38 165.2 223 43.5
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.4e-37 161.4 181 45.3
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-37 161.0 203 45.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.5e-37 160.6 248 41.5
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.2e-37 160.2 194 41.2
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 5.5e-37 159.5 180 45.0
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.5e-37 159.5 419 28.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 7.2e-37 159.1 202 46.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 7.2e-37 159.1 158 51.3
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 9.4e-37 158.7 202 46.0
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-36 157.1 203 45.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.0e-35 155.2 220 40.0
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 5.1e-35 152.9 399 30.1
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.5e-34 151.4 196 43.4
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-34 150.2 180 43.3
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 5.7e-34 149.4 180 43.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 5.7e-34 149.4 180 43.3
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.4e-34 149.1 180 42.8
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 6.3e-33 146.0 384 31.0
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-32 145.2 180 42.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 5.3e-32 142.9 180 42.8
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 7.0e-32 142.5 191 42.4
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 2.9e-30 137.1 179 41.3
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.9e-30 137.1 157 43.9
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.2e-29 133.7 320 28.1
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.2e-29 133.7 130 49.2
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.1e-28 131.0 166 41.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 8.0e-28 129.0 139 46.0
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.0e-27 128.6 134 47.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-27 128.3 180 40.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.4e-27 128.3 310 30.0
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.7e-27 125.9 230 40.4
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.2e-25 120.9 102 54.9
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.3e-25 119.4 106 52.8
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.7e-23 114.0 120 44.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 4.5e-23 113.2 145 42.1
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.5e-23 113.2 100 52.0
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 5.5e-21 106.3 150 38.0
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 5.5e-21 106.3 150 38.0
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.2e-20 105.1 173 33.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-20 104.0 150 37.3
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 4.7e-20 103.2 174 32.8
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 4.0e-19 100.1 147 38.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 9.8e-18 95.5 145 36.6
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 4.8e-17 93.2 160 32.5
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.4e-16 91.7 158 36.7
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 2.4e-16 90.9 58 70.7
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.5e-15 87.0 132 34.1
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.9e-13 81.3 67 55.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 4.2e-13 80.1 252 26.2
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 5.5e-13 79.7 62 58.1
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 6.1e-12 76.3 276 26.1
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 6.8e-11 72.8 278 25.9
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 7.5e-10 69.3 227 29.5
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 3.5e-07 60.5 46 60.9
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.5e-07 60.5 56 53.6
DCAR_028263 Daucus carota HOM05D000621 ORTHO05D000421 4.5e-07 60.1 175 25.1
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.8e-06 57.0 48 50.0


User provided reference genes

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