Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.1e-240 834.7 423 100.0
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.3e-197 691.4 399 89.7
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 7.3e-189 664.1 380 91.1
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.1e-188 662.5 381 89.5
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.4e-186 655.2 421 83.8
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.9e-182 641.7 398 85.4
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 2.8e-172 609.0 384 85.7
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.4e-163 579.3 305 95.1
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 9.0e-155 550.8 360 75.8
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.3e-149 532.3 344 84.0
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 6.0e-143 511.5 381 70.1
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.5e-141 506.1 305 79.7
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.7e-141 505.0 313 78.0
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 5.7e-141 505.0 323 76.8
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 9.7e-141 504.2 321 74.8
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 9.7e-141 504.2 378 68.0
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 4.8e-140 501.9 378 67.7
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 6.3e-140 501.5 384 70.3
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 8.2e-140 501.1 372 69.4
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.1e-139 500.7 363 70.0
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.1e-139 498.8 312 77.6
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 4.1e-139 498.8 335 74.3
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 2.0e-138 496.5 387 67.2
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 3.4e-138 495.7 317 76.7
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 5.9e-138 495.0 381 69.0
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 4.2e-136 488.8 302 76.8
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 7.9e-135 484.6 305 76.4
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 2.3e-134 483.0 388 66.5
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.9e-133 479.9 296 77.7
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 5.7e-133 478.4 325 72.3
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 1.7e-132 476.9 385 64.2
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 2.2e-132 476.5 305 74.1
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 8.2e-132 474.6 314 72.3
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 1.4e-131 473.8 321 72.0
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 1.8e-131 473.4 374 63.9
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 9.1e-131 471.1 312 71.8
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 1.2e-130 470.7 379 64.9
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 2.0e-130 469.9 322 70.2
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 2.0e-130 469.9 310 71.9
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 2.0e-130 469.9 310 71.9
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.3e-129 467.2 353 68.8
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 5.0e-129 465.3 324 70.1
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 6.5e-129 464.9 319 70.5
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 1.1e-128 464.2 397 62.2
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 9.4e-128 461.1 319 69.9
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 9.4e-128 461.1 319 69.9
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 9.4e-128 461.1 319 69.6
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 1.2e-127 460.7 319 69.3
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.2e-127 460.7 306 72.2
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 4.7e-127 458.8 429 56.4
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 7.9e-127 458.0 306 71.9
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 7.9e-127 458.0 319 69.3
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 7.9e-127 458.0 402 61.4
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 7.9e-127 458.0 378 61.6
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.4e-126 457.2 391 61.4
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.3e-126 456.4 380 61.1
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 3.9e-126 455.7 318 69.5
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 8.8e-126 454.5 389 60.7
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.5e-125 453.8 319 68.7
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 5.7e-125 451.8 331 68.6
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 1.3e-124 450.7 303 71.3
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 5.3e-123 445.3 301 73.4
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.2e-122 444.1 319 67.1
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 3.4e-122 442.6 301 70.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 3.4e-122 442.6 315 68.9
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 5.9e-122 441.8 339 63.7
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 5.9e-122 441.8 315 70.2
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 1.0e-121 441.0 359 63.8
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 5.0e-121 438.7 381 61.2
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 5.0e-121 438.7 386 61.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 6.5e-121 438.3 315 68.9
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 3.2e-120 436.0 302 68.5
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 3.6e-119 432.6 302 68.9
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 8.0e-119 431.4 386 59.8
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 8.8e-118 427.9 380 59.2
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 8.8e-118 427.9 290 73.1
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 1.1e-117 427.6 346 63.0
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 9.7e-117 424.5 301 68.4
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 4.1e-115 419.1 272 73.9
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 2.6e-114 416.4 311 65.0
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 7.7e-114 414.8 272 73.5
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 2.9e-113 412.9 312 66.7
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 1.9e-112 410.2 334 60.2
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.5e-112 409.8 294 69.0
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 9.4e-112 407.9 315 62.9
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 6.7e-110 401.7 356 57.9
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 8.8e-110 401.4 310 66.1
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 2.0e-109 400.2 412 55.6
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 8.2e-108 394.8 383 55.9
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-107 394.4 250 83.2
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 3.1e-107 392.9 373 56.0
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 9.8e-101 371.3 327 60.9
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 2.2e-100 370.2 343 53.6
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 3.5e-98 362.8 277 63.5
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 5.9e-98 362.1 283 62.9
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.1e-96 357.8 277 64.3
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 2.3e-94 350.1 513 43.5
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 2.4e-91 340.1 225 71.1
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 2.4e-91 340.1 283 60.4
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 4.3e-88 329.3 373 48.0
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 8.9e-86 321.6 267 62.5
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 2.3e-81 307.0 308 50.6
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 4.4e-77 292.7 304 48.4
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 4.6e-74 282.7 216 69.4
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 4.3e-72 276.2 308 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 2.3e-70 270.4 302 45.7
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 3.5e-66 256.5 229 57.6
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 4.7e-63 246.1 151 76.8
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-57 227.3 144 74.3
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 1.3e-49 201.4 149 63.8
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-48 198.0 161 62.1
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 6.4e-44 182.6 166 57.8
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.1e-43 181.8 152 60.5
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.1e-42 177.6 136 62.5
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 2.7e-42 177.2 129 63.6
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 7.4e-40 169.1 166 52.4
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 2.8e-39 167.2 166 53.0
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 1.1e-35 155.2 112 66.1
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 7.4e-32 142.5 184 44.0
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 4.0e-30 136.7 196 37.2
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 4.9e-28 129.8 126 54.0
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.5e-27 127.5 86 70.9
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 3.1e-22 110.5 198 32.8
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 5.5e-11 73.2 42 73.8
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 5.5e-11 73.2 42 73.8
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 2.7e-10 70.9 99 44.4
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 6.7e-09 66.2 31 83.9
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 2.2e-07 61.2 216 25.9


User provided reference genes

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