Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211611 Rosa chinensis HOM05D002388 ORTHO05D008833 8.6e-38 159.8 81 100.0
FAN18G1485 Fragaria x ananassa HOM05D002388 ORTHO05D008833 1.5e-37 159.1 81 98.8
FAN04G1000 Fragaria x ananassa HOM05D002388 ORTHO05D008833 2.5e-37 158.3 81 97.5
FAN08G0310 Fragaria x ananassa HOM05D002388 ORTHO05D008833 4.2e-37 157.5 81 96.3
Prupe.5G029600 Prunus persica HOM05D002388 ORTHO05D008833 1.8e-35 152.1 81 96.3
MD16G1280900 Malus domestica HOM05D002388 ORTHO05D008833 6.8e-35 150.2 81 93.8
MD06G1025500 Malus domestica HOM05D002388 ORTHO05D008833 1.2e-34 149.4 81 93.8
CiPaw.11G097500 Carya illinoinensis HOM05D002388 ORTHO05D008833 3.1e-32 141.4 81 87.7
Haze_08171 Corylus avellana HOM05D002388 ORTHO05D008833 1.6e-31 139.0 81 88.9
Potri.001G138100 Populus trichocarpa HOM05D002388 ORTHO05D008833 2.0e-31 138.7 81 84.0
QL12p001301 Quercus lobata HOM05D002388 ORTHO05D008833 2.0e-31 138.7 80 85.0
Actinidia14785 Actinidia chinensis HOM05D002388 ORTHO05D008833 2.7e-31 138.3 81 86.4
TAR375G0363 Trochodendron aralioides HOM05D002388 ORTHO05D008833 2.7e-31 138.3 81 84.0
CiPaw.12G067300 Carya illinoinensis HOM05D002388 ORTHO05D008833 3.5e-31 137.9 81 84.0
DCAR_004281 Daucus carota HOM05D002388 ORTHO05D008833 4.5e-31 137.5 81 85.2
SalBow6G3465 Salvia bowleyana HOM05D002388 ORTHO05D008833 1.0e-30 136.3 81 84.0
Ciclev10003014m.g Citrus clementina HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 84.0
THA.LOC104804589 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
Eucgr.D02219 Eucalyptus grandis HOM05D002388 ORTHO05D008833 1.7e-30 135.6 81 84.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.7e-30 135.6 81 81.5
Migut.A01083 Erythranthe guttata HOM05D002388 ORTHO05D008833 2.9e-30 134.8 81 80.2
PGR031G2620 Punica granatum HOM05D002388 ORTHO05D008833 2.9e-30 134.8 79 86.1
CSS0026703 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 82.7
CSS0033524 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 82.7
Dinv28991 Davidia involucrata HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 85.2
Glyma.10G041600 Glycine max HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 82.7
TWI60G0513 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 80.2
TWI81G0136 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 79.0
COL.COLO4_16958 Corchorus olitorius HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 86.4
CsaV3_3G001440 Cucumis sativus L. HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 84.0
Sed0013912 Sechium edule HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 84.0
CANSAT21G0073 Cannabis sativa HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 86.4
MELO3C013830.2 Cucumis melo HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 82.7
Medtr8g066600 Medicago truncatula HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 81.5
Peaxi162Scf00185g00821 Petunia axillaris HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 81.5
SGA_v2.0_scaffold20G09240 Striga asiatica HOM05D002388 ORTHO05D008833 6.6e-30 133.7 80 81.2
Cc08_g03400 Coffea canephora HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 81.5
Nn3g19407 Nelumbo nucifera HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 82.7
Thecc.03G308600 Theobroma cacao HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 82.7
vmacro14193 Vaccinium macrocarpon HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 81.5
TPR.G3364 Trifolium pratense HOM05D002388 ORTHO05D008833 1.1e-29 132.9 81 84.0
arahy.Tifrunner.gnm1.ann1.Y11EX9 Arachis hypogaea HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 80.2
Duzib205G0142 Durio zibethinus HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 85.2
HanXRQChr17g0538091 Helianthus annuus HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 77.8
CAN.G137.4 Capsicum annuum HOM05D002388 ORTHO05D008833 1.9e-29 132.1 81 80.2
Cpa.g.sc13.304 Carica papaya HOM05D002388 ORTHO05D008833 1.9e-29 132.1 81 84.0
Duzib068G0043 Durio zibethinus HOM05D002388 ORTHO05D008833 1.9e-29 132.1 81 84.0
Glyma.13G128600 Glycine max HOM05D002388 ORTHO05D008833 1.9e-29 132.1 81 81.5
Hma1.2p1_0870F.1_g230830 Hydrangea macrophylla HOM05D002388 ORTHO05D008833 1.9e-29 132.1 80 82.5
AUR62018655 Chenopodium quinoa HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 84.0
Lj1g0006191 Lotus japonicus HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 81.5
TAR119G0002 Trochodendron aralioides HOM05D002388 ORTHO05D008833 2.5e-29 131.7 81 82.7
ECA246G0855 Erigeron canadensis HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 77.8
CAN.G474.16 Capsicum annuum HOM05D002388 ORTHO05D008833 5.6e-29 130.6 81 79.0
AUR62007344 Chenopodium quinoa HOM05D002388 ORTHO05D008833 5.6e-29 130.6 81 84.0
Nitab4.5_0000556g0150 Nicotiana tabacum HOM05D002388 ORTHO05D008833 5.6e-29 130.6 81 79.0
GSVIVG01013070001 Vitis vinifera HOM05D002388 ORTHO05D008833 5.6e-29 130.6 78 80.8
Aa31LG4G4590 Aethionema arabicum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
A02p19260 Brassica napus HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
BolC2t09212H Brassica oleracea HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
BraA07t31559Z Brassica rapa HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Carub.0002s2112 Capsella rubella HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Thhalv10019650m.g Eutrema salsugineum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Gohir.D08G175050 Gossypium hirsutum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Gorai.004G182800 Gossypium raimondii HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
PSO384G4479 Papaver somniferum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Psat4g122960 Pisum sativum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 80.2
Ah.12g055420 Amaranthus hybridus HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 79.0
BraA02t06971Z Brassica rapa HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 82.7
Manes.04G058600 Manihot esculenta HOM05D002388 ORTHO05D008833 1.2e-28 129.4 79 82.3
Medtr2g014320 Medicago truncatula HOM05D002388 ORTHO05D008833 1.2e-28 129.4 78 80.8
AL2G34200 Arabidopsis lyrata HOM05D003614 ORTHO05D004156 1.6e-28 129.0 81 81.5
AT1G74340 Arabidopsis thaliana HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 81.5
CSS0009097 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.6e-28 129.0 80 81.2
CARHR067600 Cardamine hirsuta HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 81.5
Peaxi162Scf00045g00216 Petunia axillaris HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 77.8
unitig_32.g10897 Utricularia gibba HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 79.0
Nitab4.5_0002778g0070 Nicotiana tabacum HOM05D002388 ORTHO05D008833 2.1e-28 128.6 80 78.8
Sp5g29500 Schrenkiella parvula HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 81.5
BcaC08g46864 Brassica carinata HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 82.7
BolC6t39879H Brassica oleracea HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 82.7
Nitab4.5_0001632g0030 Nicotiana tabacum HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 77.8
PSO339G0280 Papaver somniferum HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 81.5
Nitab4.5_0000109g0080 Nicotiana tabacum HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 77.8
Solyc08g005210.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 77.8
Sopen08g001240 Solanum pennellii HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 77.8
EL10Ac5g12027 Beta vulgaris HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 80.2
Phvul.003G283500 Phaseolus vulgaris HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 76.5
Sopen06g021590 Solanum pennellii HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 76.5
CSS0006499 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 8.0e-28 126.7 80 80.0
Lsat_1_v5_gn_3_19620 Lactuca sativa HOM05D002388 ORTHO05D008833 1.0e-27 126.3 83 74.7
PGSC0003DMG400016784 Solanum tuberosum HOM05D002388 ORTHO05D008833 1.4e-27 125.9 81 75.3
Lalb_Chr05g0225791 Lupinus albus HOM05D002388 ORTHO05D008833 1.8e-27 125.6 81 79.0
Solyc06g066400.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 1.8e-27 125.6 81 75.3
Peaxi162Scf00038g00010 Petunia axillaris HOM05D002388 ORTHO05D008833 4.0e-27 124.4 79 75.9
PGSC0003DMG400003487 Solanum tuberosum HOM05D002388 ORTHO05D008833 5.2e-27 124.0 81 76.5
Os11g0311550 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 6.8e-27 123.6 79 77.2
CDE05G0657 Ceratophyllum demersum HOM05D002388 ORTHO05D008833 5.7e-26 120.6 80 73.8
ATR0564G363 Amborella trichopoda HOM05D002388 ORTHO05D008833 7.5e-26 120.2 81 74.1
THA.LOC104808763 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 4.6e-23 110.9 76 72.4
SEGI_36022 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 5.6e-21 104.0 81 60.5
Mapoly0067s0029 Marchantia polymorpha HOM05D002388 ORTHO05D008833 6.2e-20 100.5 80 60.0
Nn1g00187 Nelumbo nucifera HOM05D002388 ORTHO05D008833 8.0e-20 100.1 57 86.0
PGSC0003DMG400043827 Solanum tuberosum HOM05D002388 ORTHO05D008833 1.8e-19 99.0 81 64.2
CSS0023919 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.1e-16 89.7 78 65.4
Hund14364 Selenicereus undatus HOM05D002388 ORTHO05D008833 1.1e-16 89.7 51 86.3
AagrBONN_evm.TU.Sc2ySwM_228.4391 Anthoceros agrestis HOM05D003123 ORTHO05D003492 1.4e-16 89.4 76 52.6
Pp3c22_2990 Physcomitrium patens HOM05D002388 ORTHO05D008833 1.4e-16 89.4 80 55.0
ClCG10G001370 Citrullus lanatus HOM05D002388 ORTHO05D008833 2.7e-15 85.1 53 79.2
PGSC0003DMG400016734 Solanum tuberosum HOM05D002388 ORTHO05D008833 6.0e-15 84.0 55 74.5
Os02g0140101 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 7.8e-15 83.6 49 79.6
SEGI_14802 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 1.3e-14 82.8 64 62.5
BcaB05g24849 Brassica carinata HOM05D002388 ORTHO05D008833 3.9e-14 81.3 50 80.0
arahy.Tifrunner.gnm1.ann1.G961TR Arachis hypogaea HOM05D002388 ORTHO05D008833 8.6e-14 80.1 82 54.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.6e-07 59.3 39 61.5


User provided reference genes

Program Settings