Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 2.4e-54 215.3 113 100.0
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.0e-52 207.6 113 95.6
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.0e-52 207.6 113 95.6
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 6.5e-52 207.2 113 95.6
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.5e-52 207.2 113 95.6
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.5e-52 207.2 113 95.6
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.6e-50 202.6 113 93.8
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.6e-50 202.6 113 93.8
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 4.5e-37 157.9 113 77.0
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 3.4e-32 141.7 112 67.9
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 1.4e-30 136.3 111 67.6
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 3.1e-30 135.2 109 70.6
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 9.2e-30 133.7 113 66.4
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 9.2e-30 133.7 109 71.6
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 1.2e-29 133.3 114 64.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 1.6e-29 132.9 113 64.6
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 2.7e-29 132.1 113 65.5
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 3.5e-29 131.7 114 64.9
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 7.8e-29 130.6 108 70.4
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 2.9e-28 128.6 113 68.1
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 1.1e-27 126.7 115 64.3
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 5.6e-27 124.4 107 64.5
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 1.6e-26 122.9 111 63.1
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 2.1e-26 122.5 91 74.7
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.8e-26 122.1 111 65.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 4.7e-26 121.3 102 67.6
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 4.7e-26 121.3 114 61.4
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 4.7e-26 121.3 116 59.5
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 8.0e-26 120.6 109 62.4
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.4e-25 119.8 105 64.8
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 1.4e-25 119.8 99 68.7
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.3e-25 119.0 111 64.9
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 3.0e-25 118.6 91 71.4
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 4.0e-25 118.2 117 63.2
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 8.9e-25 117.1 113 59.3
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 2.6e-24 115.5 99 66.7
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 5.7e-24 114.4 113 57.5
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 9.8e-24 113.6 93 67.7
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 2.2e-23 112.5 113 58.4
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 6.4e-23 110.9 93 64.5
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 6.4e-23 110.9 100 67.0
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 8.3e-23 110.5 109 55.0
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 1.1e-22 110.2 86 66.3
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.4e-22 109.8 94 63.8
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 1.8e-22 109.4 90 68.9
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 1.8e-22 109.4 103 58.3
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 1.8e-22 109.4 91 70.3
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 2.4e-22 109.0 91 69.2
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 2.4e-22 109.0 103 59.2
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 2.4e-22 109.0 91 65.9
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 5.4e-22 107.8 114 54.4
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 7.0e-22 107.5 114 53.5
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 3.5e-21 105.1 98 60.2
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 5.9e-21 104.4 98 58.2
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 7.8e-21 104.0 101 58.4
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 1.0e-20 103.6 107 56.1
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.3e-20 103.2 93 68.8
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.3e-20 103.2 102 58.8
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.7e-20 102.8 96 59.4
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 3.0e-20 102.1 91 61.5
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 5.0e-20 101.3 105 56.2
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 6.6e-20 100.9 98 56.1
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 8.6e-20 100.5 115 53.0
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 8.6e-20 100.5 101 56.4
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 1.1e-19 100.1 106 55.7
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 1.5e-19 99.8 113 53.1
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 1.9e-19 99.4 98 56.1
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.9e-19 99.4 102 56.9
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 1.9e-19 99.4 115 52.2
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 2.5e-19 99.0 98 56.1
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 2.5e-19 99.0 173 42.8
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 3.3e-19 98.6 104 54.8
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 3.3e-19 98.6 93 61.3
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 7.3e-19 97.4 93 58.1
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 7.3e-19 97.4 93 58.1
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 1.2e-18 96.7 102 55.9
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 1.6e-18 96.3 99 54.5
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.6e-18 96.3 91 59.3
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 2.8e-18 95.5 99 55.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 2.8e-18 95.5 99 55.6
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 2.8e-18 95.5 101 54.5
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.7e-18 94.7 98 54.1
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 5.2e-17 91.3 92 57.6
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 8.9e-17 90.5 94 60.6
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.0e-16 89.4 122 46.7
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 2.2e-15 85.9 88 55.7
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 2.9e-15 85.5 102 50.0
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 8.3e-15 84.0 134 44.8
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.4e-14 83.2 86 55.8
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.9e-14 82.8 91 56.0
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 2.4e-14 82.4 55 69.1
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 5.4e-14 81.3 91 53.8
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 7.0e-14 80.9 93 53.8
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 3.5e-13 78.6 50 74.0
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.0e-12 77.0 52 69.2
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 3.0e-12 75.5 96 46.9
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 3.9e-12 75.1 88 53.4
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 6.6e-12 74.3 61 59.0
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 1.9e-11 72.8 60 60.0
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.5e-11 72.4 40 80.0
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.3e-07 60.1 42 64.3


User provided reference genes

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