Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 1.0e-111 406.8 202 100.0
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 2.2e-95 352.4 201 89.1
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 9.5e-70 267.3 201 67.7
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 9.8e-67 257.3 201 65.2
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 6.4e-66 254.6 201 64.2
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.4e-65 252.7 201 64.7
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 7.0e-65 251.1 201 64.7
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 1.6e-64 250.0 201 64.7
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 1.3e-58 230.3 201 61.2
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.3e-58 230.3 201 61.2
RcHm_v2.0_Chr3g0475771 Rosa chinensis HOM05D010052 ORTHO05D010666 6.4e-42 174.9 186 48.9
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 5.4e-33 145.2 215 41.4
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 6.6e-31 138.3 193 41.5
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 4.3e-30 135.6 196 42.3
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 9.6e-30 134.4 139 52.5
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 2.8e-29 132.9 137 53.3
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 9.9e-27 124.4 207 38.6
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 4.3e-14 82.4 214 30.8
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.8e-13 79.7 147 34.0
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 1.4e-12 77.4 193 28.5
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 1.4e-12 77.4 193 28.5
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 1.4e-12 77.4 193 28.5
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 1.4e-12 77.4 199 30.7
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 1.8e-12 77.0 196 30.6
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 2.4e-12 76.6 192 30.7
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 2.4e-12 76.6 157 30.6
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 4.1e-12 75.9 179 29.6
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 4.1e-12 75.9 179 27.4
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 5.3e-12 75.5 159 30.8
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 5.3e-12 75.5 192 27.6
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 5.3e-12 75.5 193 28.5
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 5.3e-12 75.5 193 28.5
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 5.3e-12 75.5 179 29.6
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 6.9e-12 75.1 164 31.7
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 9.0e-12 74.7 156 28.2
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 1.2e-11 74.3 188 28.2
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 1.2e-11 74.3 174 31.6
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 2.0e-11 73.6 187 27.8
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 2.6e-11 73.2 195 27.7
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 2.6e-11 73.2 180 29.4
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 2.6e-11 73.2 180 29.4
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 2.6e-11 73.2 197 28.4
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 3.4e-11 72.8 171 29.2
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 7.6e-11 71.6 178 28.7
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 7.6e-11 71.6 147 30.6
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 1.0e-10 71.2 183 28.4
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 1.0e-10 71.2 176 27.8
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 1.7e-10 70.5 166 30.7
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 2.2e-10 70.1 156 28.8
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 2.2e-10 70.1 156 28.8
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 2.2e-10 70.1 156 28.8
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 3.8e-10 69.3 191 29.8
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.8e-10 69.3 193 29.0
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 5.0e-10 68.9 194 30.4
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 6.5e-10 68.6 139 29.5
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 8.4e-10 68.2 187 30.5
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.1e-09 67.8 178 27.5
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 1.4e-09 67.4 151 31.1
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 1.9e-09 67.0 185 25.9
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 1.9e-09 67.0 185 25.9
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.5e-09 66.6 132 30.3
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 3.2e-09 66.2 191 27.2
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 4.2e-09 65.9 159 30.8
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 5.5e-09 65.5 147 29.9
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 5.5e-09 65.5 147 29.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.5e-09 65.5 172 26.7
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.5e-09 65.5 172 26.7
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 7.1e-09 65.1 134 29.1
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 9.3e-09 64.7 147 29.3
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 9.3e-09 64.7 185 26.5
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 9.3e-09 64.7 140 27.9
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.2e-08 64.3 152 27.0
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 1.6e-08 63.9 169 29.6
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.6e-08 63.9 188 26.1
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-08 63.9 176 27.3
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.7e-08 63.2 193 26.4
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.5e-08 62.8 159 25.8
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 3.5e-08 62.8 179 24.6
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 3.5e-08 62.8 179 24.6
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 3.5e-08 62.8 166 29.5
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 4.6e-08 62.4 173 23.7
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 6.1e-08 62.0 184 25.0
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 6.1e-08 62.0 149 30.9
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 6.1e-08 62.0 194 28.4
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 7.9e-08 61.6 194 27.3
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 7.9e-08 61.6 194 27.3
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 7.9e-08 61.6 194 27.3
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 7.9e-08 61.6 158 29.7
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 7.9e-08 61.6 182 25.3
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 1.0e-07 61.2 150 30.7
Lj1P303T22 Lonicera japonica HOM05D023306 ORTHO05D002052 1.0e-07 61.2 112 33.9
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 1.3e-07 60.8 194 27.8
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.3e-07 60.8 136 25.7
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 1.8e-07 60.5 194 27.3
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 1.8e-07 60.5 194 27.3
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 1.8e-07 60.5 184 27.2
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.8e-07 60.5 191 26.2
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.8e-07 60.5 145 29.7
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.8e-07 60.5 153 25.5
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 2.3e-07 60.1 157 26.1
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 2.3e-07 60.1 194 28.4
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 2.3e-07 60.1 131 30.5
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.3e-07 60.1 182 24.2
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.3e-07 60.1 185 28.1
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 3.0e-07 59.7 177 28.2
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 3.0e-07 59.7 159 30.8
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 3.0e-07 59.7 159 30.8
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 3.0e-07 59.7 159 30.8
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 3.0e-07 59.7 173 24.3
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 3.9e-07 59.3 143 27.3
Thecc.02G128800 Theobroma cacao HOM05D015680 ORTHO05D010825 3.9e-07 59.3 160 27.5
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 5.1e-07 58.9 149 29.5
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.1e-07 58.9 137 26.3
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 5.1e-07 58.9 149 27.5
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.1e-07 58.9 173 24.9
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 6.7e-07 58.5 136 24.3
Psat3g029040 Pisum sativum HOM05D017388 ORTHO05D010666 8.7e-07 58.2 134 33.6
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.1e-06 57.8 150 30.7
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 1.5e-06 57.4 159 28.3
Lj1C294T11 Lonicera japonica HOM05D023306 ORTHO05D012721 1.5e-06 57.4 110 31.8
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.5e-06 57.4 129 27.1
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 1.9e-06 57.0 169 25.4
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 1.9e-06 57.0 190 28.4
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.9e-06 57.0 137 24.1
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 2.5e-06 56.6 150 28.7
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.5e-06 56.6 173 25.4
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 3.3e-06 56.2 172 26.2
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 3.3e-06 56.2 166 24.7
Lj1g0008918 Lotus japonicus HOM05D017388 ORTHO05D010666 4.3e-06 55.8 129 33.3
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 5.7e-06 55.5 158 26.6
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 5.7e-06 55.5 149 29.5
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 5.7e-06 55.5 189 23.3
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 5.7e-06 55.5 156 24.4
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 5.7e-06 55.5 156 27.6
Prupe.6G114100 Prunus persica HOM05D000980 ORTHO05D000649 7.4e-06 55.1 150 24.0
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 9.7e-06 54.7 174 22.4


User provided reference genes

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