Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 3.9e-288 994.2 542 100.0
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.5e-239 832.8 542 85.8
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.5e-239 832.8 542 85.8
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.4e-238 827.4 542 85.2
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.6e-235 817.0 542 84.5
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.1e-234 816.6 542 84.5
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.6e-231 805.4 542 84.3
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.9e-187 658.7 564 68.6
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.0e-171 605.9 559 65.1
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 4.2e-165 585.5 560 63.4
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 9.5e-133 478.0 561 53.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 8.0e-132 474.9 565 53.5
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 9.2e-128 461.5 573 50.8
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 2.0e-127 460.3 571 51.7
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 2.7e-127 459.9 559 53.1
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.7e-127 459.9 570 52.6
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.1e-125 454.5 573 51.1
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 5.6e-125 452.2 569 51.8
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.6e-125 452.2 571 51.5
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 2.1e-124 450.3 569 49.9
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 4.7e-124 449.1 576 49.7
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.8e-123 447.2 599 49.2
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 2.3e-123 446.8 584 49.5
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.0e-122 443.7 569 50.6
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 4.4e-122 442.6 582 51.5
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 4.9e-121 439.1 569 50.4
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-120 438.0 603 49.3
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.4e-120 436.8 569 50.1
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.2e-119 434.5 632 47.8
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.6e-119 432.6 575 49.0
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.7e-118 430.6 587 48.6
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.3e-118 430.3 571 49.7
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 2.3e-118 430.3 590 48.0
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.6e-118 428.7 562 50.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 6.6e-118 428.7 617 49.6
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-117 427.9 562 50.0
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.9e-117 427.2 568 49.6
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 9.5e-117 424.9 559 50.6
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.6e-116 424.1 541 51.4
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 3.6e-116 422.9 555 49.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.6e-116 422.9 561 50.3
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.8e-115 420.6 405 62.2
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.8e-115 420.6 584 49.5
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.6e-114 416.8 549 49.4
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 2.2e-113 413.7 595 50.6
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 6.4e-113 412.1 552 49.6
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 6.4e-113 412.1 552 49.6
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.1e-112 411.4 556 48.2
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.4e-112 410.2 571 49.9
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 4.1e-112 409.5 571 49.0
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 4.1e-112 409.5 575 49.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 4.1e-112 409.5 557 46.9
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.2e-111 407.9 448 55.8
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 3.5e-111 406.4 393 58.5
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 4.6e-111 406.0 573 47.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 7.8e-111 405.2 389 60.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 3.0e-110 403.3 553 48.6
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 3.0e-110 403.3 571 49.7
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 6.6e-110 402.1 397 57.4
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.5e-109 400.2 585 47.7
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.1e-108 397.1 572 47.2
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.8e-107 394.0 387 59.2
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.4e-107 393.7 580 47.9
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 4.0e-107 392.9 573 46.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 5.2e-107 392.5 590 47.1
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 8.9e-107 391.7 554 47.7
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 2.0e-106 390.6 570 48.2
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 9.9e-106 388.3 391 57.3
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.3e-105 387.9 569 47.6
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.4e-104 383.6 559 48.3
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.4e-104 383.6 572 46.3
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 3.2e-104 383.3 563 48.5
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 3.2e-104 383.3 558 47.5
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 7.1e-104 382.1 567 47.8
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.2e-103 381.3 563 46.0
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 2.7e-103 380.2 598 46.7
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 5.1e-102 375.9 571 47.1
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 5.1e-102 375.9 543 47.1
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 6.6e-102 375.6 408 56.6
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 6.6e-102 375.6 491 48.3
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 9.6e-101 371.7 403 55.8
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 4.0e-99 366.3 560 46.8
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.0e-99 366.3 540 46.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.9e-99 365.5 558 46.8
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 6.9e-99 365.5 537 46.7
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.0e-98 364.0 401 55.1
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.0e-98 364.0 571 46.4
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.6e-98 363.6 557 46.3
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 4.5e-98 362.8 401 55.9
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 7.6e-98 362.1 399 55.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 7.6e-98 362.1 583 43.4
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 9.9e-98 361.7 401 55.6
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 9.9e-98 361.7 401 55.6
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 1.9e-96 357.5 416 53.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 3.2e-96 356.7 560 46.2
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.0e-94 351.7 403 53.8
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 6.7e-94 349.0 569 44.8
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 4.3e-93 346.3 395 53.4
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 7.4e-93 345.5 563 43.5
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.2e-90 338.2 551 44.1
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 8.4e-89 332.0 463 46.2
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.2e-87 328.2 422 50.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.6e-85 319.3 576 42.5
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.1e-83 315.1 405 49.6
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.3e-81 308.1 386 50.8
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.2e-81 307.4 559 43.1
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 7.1e-80 302.4 345 53.3
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.3e-78 297.4 500 42.2
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.1e-78 296.2 456 45.0
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.9e-77 294.3 388 47.4
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.4e-75 288.1 355 49.6
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.5e-50 203.8 377 40.8
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.5e-48 197.6 141 67.4
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 7.5e-45 186.0 585 32.1
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.7e-44 183.7 132 67.4
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 9.1e-43 179.1 444 34.7
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.7e-42 177.6 341 36.7
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.5e-40 171.0 302 42.4
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.0e-38 165.6 216 44.9
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 9.8e-37 159.1 194 45.9
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 3.5e-34 150.6 339 36.0
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.8e-33 147.1 108 67.6
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.4e-30 138.7 213 43.2
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 3.7e-28 130.6 117 60.7
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.7e-26 124.4 205 39.5
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 3.5e-26 124.0 198 39.9
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-25 120.9 103 55.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.9e-25 120.9 103 55.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 1.6e-23 115.2 205 38.5
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.8e-23 114.4 326 31.9
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.3e-16 90.9 246 32.9
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.7e-15 87.0 62 69.4
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 8.0e-15 86.3 175 43.4
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.2e-11 74.3 191 40.3
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 1.7e-09 68.6 206 27.7
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 1.1e-06 59.3 302 23.5


User provided reference genes

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