Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.1e-72 277.3 244 100.0
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-42 177.2 248 72.6
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-42 177.2 248 72.6
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.9e-42 175.3 248 72.6
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-41 172.2 248 72.2
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.0e-38 164.5 156 62.8
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 6.0e-26 122.1 156 49.4
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.1e-18 97.1 116 50.9
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.5e-16 90.1 178 39.3
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.1e-15 87.0 135 43.0
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 6.2e-15 85.5 158 40.5
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.8e-14 84.0 133 42.1
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.1e-14 83.2 142 41.5
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.1e-14 83.2 142 41.5
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 8.9e-14 81.6 147 38.8
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.2e-13 81.3 152 40.8
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 5.8e-13 79.0 193 37.3
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.9e-13 78.2 142 40.1
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 9.9e-13 78.2 152 40.1
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 3.7e-12 76.3 175 36.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.7e-12 76.3 146 37.0
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.7e-12 76.3 146 37.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.9e-12 75.9 145 40.7
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 1.4e-11 74.3 159 35.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.9e-11 73.9 126 42.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.2e-11 73.2 128 37.5
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 3.2e-11 73.2 98 45.9
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.4e-11 72.4 60 58.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.2e-10 71.2 163 38.7
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 1.6e-10 70.9 143 39.9
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 2.7e-10 70.1 160 35.0
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.5e-10 69.7 161 33.5
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 4.6e-10 69.3 133 36.8
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 4.6e-10 69.3 133 36.8
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 4.6e-10 69.3 159 36.5
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 7.8e-10 68.6 197 30.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 7.8e-10 68.6 198 30.3
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 7.8e-10 68.6 173 35.3
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 7.8e-10 68.6 102 46.1
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 7.8e-10 68.6 41 75.6
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 43 72.1
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 165 32.1
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.3e-09 67.8 102 42.2
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.3e-09 67.8 187 33.2
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.3e-09 67.8 149 34.9
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.7e-09 67.4 40 72.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.7e-09 67.4 41 73.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.7e-09 67.4 146 37.7
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.7e-09 67.4 163 34.4
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 2.3e-09 67.0 41 70.7
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 3.0e-09 66.6 44 63.6
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.9e-09 66.2 70 45.7
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 5.1e-09 65.9 132 37.1
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 5.1e-09 65.9 70 45.7
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 6.6e-09 65.5 100 43.0
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 6.6e-09 65.5 122 41.8
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 6.6e-09 65.5 51 60.8
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.6e-09 65.1 78 51.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.1e-08 64.7 162 32.7
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.9e-08 63.9 107 39.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.9e-08 63.9 107 39.3
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.9e-08 63.9 41 70.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.9e-08 63.9 74 47.3
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 2.5e-08 63.5 87 48.3
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 3.3e-08 63.2 120 35.0
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.3e-08 63.2 160 32.5
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.3e-08 63.2 43 65.1
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 4.3e-08 62.8 104 39.4
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.3e-08 62.8 41 63.4
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 4.3e-08 62.8 63 50.8
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.3e-08 62.8 175 31.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 4.3e-08 62.8 85 42.4
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 5.6e-08 62.4 105 39.0
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 5.6e-08 62.4 130 36.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.3e-08 62.0 202 32.7
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 9.5e-08 61.6 37 73.0
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 9.5e-08 61.6 89 38.2
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.2e-07 61.2 42 64.3
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.2e-07 61.2 38 68.4
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 1.2e-07 61.2 42 64.3
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.2e-07 61.2 85 44.7
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-07 61.2 74 45.9
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-07 61.2 124 37.9
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.6e-07 60.8 120 34.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.6e-07 60.8 74 44.6
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.6e-07 60.8 74 44.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.6e-07 60.8 67 46.3
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 2.8e-07 60.1 41 65.9
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.8e-07 60.1 120 35.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 2.8e-07 60.1 42 61.9
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 2.8e-07 60.1 41 65.9
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.6e-07 59.7 42 61.9
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 3.6e-07 59.7 156 33.3
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 4.7e-07 59.3 41 63.4
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 6.2e-07 58.9 41 61.0
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 6.2e-07 58.9 41 58.5
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 6.2e-07 58.9 94 38.3
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 8.1e-07 58.5 33 75.8
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 8.1e-07 58.5 42 59.5
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-06 57.8 73 45.2
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.8e-06 57.4 37 62.2
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.8e-06 57.4 42 59.5
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.4e-06 57.0 40 65.0
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 2.4e-06 57.0 37 62.2
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 3.1e-06 56.6 172 32.0
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.1e-06 56.6 64 50.0
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.0e-06 56.2 30 80.0
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 4.0e-06 56.2 44 54.5
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 8.9e-06 55.1 84 35.7
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 8.9e-06 55.1 64 48.4


User provided reference genes

Program Settings