Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 3.2e-44 181.4 93 100.0
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.6e-35 152.5 86 89.5
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.6e-35 152.5 86 89.5
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.6e-35 152.5 86 89.5
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 4.6e-35 151.0 86 88.4
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 1.7e-21 105.9 86 67.4
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 2.6e-14 82.0 86 52.3
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 2.6e-14 82.0 84 57.1
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 3.4e-14 81.6 77 57.1
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 5.8e-14 80.9 84 56.0
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 1.3e-13 79.7 76 56.6
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 1.7e-13 79.3 86 51.2
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 2.2e-13 79.0 75 61.3
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 2.2e-13 79.0 75 61.3
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 2.2e-13 79.0 77 55.8
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 8.4e-13 77.0 83 54.2
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 1.4e-12 76.3 84 51.2
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 1.9e-12 75.9 76 55.3
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 4.2e-12 74.7 87 48.3
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 4.2e-12 74.7 76 56.6
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 5.4e-12 74.3 82 53.7
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 5.4e-12 74.3 78 53.8
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 5.4e-12 74.3 84 50.0
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 7.1e-12 73.9 87 48.3
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 7.1e-12 73.9 87 48.3
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 7.1e-12 73.9 87 48.3
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 9.3e-12 73.6 82 50.0
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 9.3e-12 73.6 82 48.8
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 9.3e-12 73.6 82 50.0
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 1.6e-11 72.8 86 45.3
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 2.7e-11 72.0 86 46.5
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 3.5e-11 71.6 76 50.0
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 3.5e-11 71.6 82 47.6
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 3.5e-11 71.6 86 46.5
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 4.6e-11 71.2 76 48.7
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 4.6e-11 71.2 76 48.7
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 6.0e-11 70.9 87 46.0
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 7.8e-11 70.5 82 47.6
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 7.8e-11 70.5 87 46.0
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 1.0e-10 70.1 83 49.4
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 3.0e-10 68.6 85 45.9
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 8.7e-10 67.0 84 47.6
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 8.7e-10 67.0 78 47.4
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 1.1e-09 66.6 87 44.8
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 1.1e-09 66.6 87 44.8
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 1.5e-09 66.2 82 46.3
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 2.5e-09 65.5 78 47.4
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 2.5e-09 65.5 78 44.9
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 2.5e-09 65.5 78 44.9
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 2.5e-09 65.5 81 45.7
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 3.3e-09 65.1 83 39.8
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 3.3e-09 65.1 87 43.7
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 4.3e-09 64.7 86 44.2
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 5.6e-09 64.3 81 45.7
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 1.3e-08 63.2 79 41.8
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 2.1e-08 62.4 79 44.3
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 2.1e-08 62.4 76 46.1
AUR62007288 Chenopodium quinoa HOM05D008115 ORTHO05D010112 3.6e-08 61.6 76 43.4
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 6.9e-07 57.4 30 86.7
FAN28G0102 Fragaria x ananassa HOM05D008614 ORTHO05D010420 3.4e-06 55.1 81 38.3
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 3.4e-06 55.1 71 46.5
Aqoxy6G03038 Aquilegia oxysepala HOM05D008614 ORTHO05D010420 4.4e-06 54.7 77 40.3
Sc01g0007450 Simmondsia chinensis HOM05D008115 ORTHO05D010112 5.8e-06 54.3 75 44.0


User provided reference genes

Program Settings