Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 2.2e-182 642.1 310 100.0
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.0e-168 595.1 313 92.0
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 1.2e-167 593.2 313 91.7
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.0e-167 592.4 313 91.4
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.0e-163 580.1 338 84.9
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 2.9e-142 508.8 315 77.1
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 1.2e-137 493.4 316 76.6
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 6.9e-136 487.6 313 78.0
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 7.3e-130 467.6 312 71.2
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 1.7e-126 456.4 318 68.9
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 2.9e-126 455.7 309 70.9
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 1.0e-123 447.2 313 66.5
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 6.7e-123 444.5 312 64.7
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 3.3e-122 442.2 334 65.6
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 3.7e-121 438.7 306 69.0
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 1.8e-120 436.4 309 67.6
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 4.0e-120 435.3 300 68.3
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 4.0e-120 435.3 299 68.6
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 5.3e-120 434.9 297 68.4
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 9.0e-120 434.1 311 65.3
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 4.5e-119 431.8 301 68.1
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 9.9e-119 430.6 311 65.3
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 4.9e-118 428.3 310 63.5
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 4.9e-118 428.3 301 67.8
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 6.4e-118 427.9 290 71.0
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 2.4e-117 426.0 294 67.0
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 9.3e-117 424.1 296 66.9
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 7.9e-116 421.0 294 68.4
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 7.9e-116 421.0 303 65.0
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 1.0e-115 420.6 301 66.8
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 1.0e-115 420.6 301 66.8
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 1.0e-115 420.6 301 66.8
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 1.0e-115 420.6 295 65.8
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 1.3e-115 420.2 298 66.4
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 1.8e-115 419.9 297 66.3
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.3e-115 419.5 294 66.0
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 5.1e-115 418.3 315 63.2
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 1.5e-114 416.8 310 63.5
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 2.5e-114 416.0 311 61.1
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 4.3e-114 415.2 311 65.6
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 5.6e-114 414.8 295 65.1
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 7.4e-114 414.5 295 66.4
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 1.3e-113 413.7 294 65.3
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 2.8e-113 412.5 296 64.5
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 2.8e-113 412.5 299 66.2
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 1.1e-112 410.6 299 64.5
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 1.8e-112 409.8 301 64.8
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 2.4e-112 409.5 342 58.2
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 4.0e-112 408.7 313 62.0
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 5.3e-112 408.3 299 64.5
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 5.3e-112 408.3 292 64.0
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 5.3e-112 408.3 304 62.2
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 6.9e-112 407.9 294 65.6
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 1.2e-111 407.1 321 61.1
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 1.2e-111 407.1 292 64.7
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 5.8e-111 404.8 294 65.3
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 1.0e-110 404.1 314 61.1
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 1.3e-110 403.7 294 64.3
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 1.3e-110 403.7 294 64.3
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.7e-110 403.3 307 61.6
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 2.9e-110 402.5 303 62.4
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.9e-110 402.5 284 65.5
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 3.8e-110 402.1 303 64.7
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 8.4e-110 401.0 303 65.7
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 1.1e-109 400.6 299 62.5
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 1.4e-109 400.2 299 63.5
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 4.2e-109 398.7 294 63.9
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 4.2e-109 398.7 308 60.4
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 7.9e-108 394.4 307 61.2
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 1.0e-107 394.0 294 63.3
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 2.3e-107 392.9 306 62.4
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 8.7e-107 391.0 307 61.6
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 1.1e-106 390.6 300 61.7
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 1.5e-106 390.2 289 64.4
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 1.9e-106 389.8 294 60.9
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.1e-104 384.0 311 61.4
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 2.4e-104 382.9 295 60.7
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 6.9e-104 381.3 295 61.4
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 5.5e-101 371.7 297 59.3
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 7.2e-101 371.3 327 55.0
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 9.3e-101 370.9 296 60.5
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 9.3e-101 370.9 430 47.4
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 1.6e-100 370.2 294 61.2
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 6.7e-99 364.8 295 56.3
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.8e-97 359.4 263 66.5
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 8.2e-97 357.8 290 58.3
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.4e-96 357.1 295 59.7
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 4.1e-96 355.5 327 54.7
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.2e-95 354.0 297 57.6
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 1.2e-95 354.0 292 57.9
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 2.6e-95 352.8 450 44.7
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 2.2e-94 349.7 300 57.7
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 7.2e-93 344.7 296 55.4
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 9.4e-93 344.4 285 58.6
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 6.1e-92 341.7 309 52.8
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 2.0e-90 336.7 294 56.5
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 2.0e-87 326.6 289 53.6
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 4.7e-84 315.5 307 51.8
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 2.3e-75 286.6 221 64.7
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 8.2e-73 278.1 292 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 1.3e-70 270.8 307 43.6
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 4.4e-66 255.8 182 65.9
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.6e-63 247.3 299 41.1
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 3.4e-58 229.6 150 71.3
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.7e-54 217.2 291 39.5
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.0e-51 208.0 267 40.1
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 2.0e-42 177.2 116 69.8
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 6.2e-36 155.6 87 74.7
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 9.2e-32 141.7 116 56.9
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 3.8e-09 66.6 70 50.0
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 1.1e-08 65.1 171 29.8


User provided reference genes

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