Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0209181 Rosa chinensis HOM05D007142 ORTHO05D008983 9.2e-141 503.4 236 100.0
FAN08G2513 Fragaria x ananassa HOM05D007142 ORTHO05D008983 2.8e-137 491.9 236 97.0
FAN18G0559 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.1e-133 479.9 236 95.3
FvH4_5g21680 Fragaria vesca HOM05D007142 ORTHO05D008983 3.2e-133 478.4 236 95.3
FAN04G2755 Fragaria x ananassa HOM05D007142 ORTHO05D008983 8.6e-123 443.7 237 90.3
MD06G1031800 Malus domestica HOM05D007142 ORTHO05D008983 1.3e-115 419.9 237 87.8
Haze_08264 Corylus avellana HOM05D007142 ORTHO05D008983 1.1e-114 416.8 236 84.3
FAN13G1057 Fragaria x ananassa HOM05D007142 ORTHO05D008983 6.2e-113 411.0 197 95.9
Duzib205G0350 Durio zibethinus HOM05D007142 ORTHO05D008983 1.8e-112 409.5 236 81.8
CiPaw.11G091400 Carya illinoinensis HOM05D007142 ORTHO05D008983 4.0e-112 408.3 236 84.3
COL.COLO4_17070 Corchorus olitorius HOM05D007142 ORTHO05D008983 4.4e-111 404.8 237 82.7
Thecc.03G230800 Theobroma cacao HOM05D007142 ORTHO05D008983 4.4e-111 404.8 236 82.6
QL12p006204 Quercus lobata HOM05D007142 ORTHO05D008983 3.8e-110 401.7 234 82.9
Prupe.5G040300 Prunus persica HOM05D007142 ORTHO05D008983 4.9e-110 401.4 235 84.3
GSVIVG01013184001 Vitis vinifera HOM05D007142 ORTHO05D008983 1.6e-108 396.4 236 81.4
Glyma.17G154151 Glycine max HOM05D007142 ORTHO05D008983 1.7e-107 392.9 223 83.9
Gorai.004G186600 Gossypium raimondii HOM05D007142 ORTHO05D008983 1.7e-107 392.9 237 80.2
Gohir.D08G178400 Gossypium hirsutum HOM05D007142 ORTHO05D008983 8.7e-107 390.6 237 79.7
Ciclev10032530m.g Citrus clementina HOM05D007142 ORTHO05D008983 4.3e-106 388.3 231 81.0
Lalb_Chr09g0329501 Lupinus albus HOM05D007142 ORTHO05D008983 9.6e-106 387.1 238 79.0
Eucgr.D02183 Eucalyptus grandis HOM05D007142 ORTHO05D008983 1.3e-105 386.7 237 78.1
Lj4g0022330 Lotus japonicus HOM05D007142 ORTHO05D008983 1.6e-105 386.3 236 80.5
DCAR_032211 Daucus carota HOM05D007142 ORTHO05D008983 2.8e-105 385.6 236 77.5
TPR.G28665 Trifolium pratense HOM05D007142 ORTHO05D008983 2.8e-105 385.6 236 77.5
Dinv28934 Davidia involucrata HOM05D007142 ORTHO05D008983 3.6e-105 385.2 237 79.3
Actinidia25952 Actinidia chinensis HOM05D007142 ORTHO05D008983 8.1e-105 384.0 232 80.2
Atru.chr6.1752 Acer truncatum HOM05D007142 ORTHO05D008983 1.4e-104 383.3 236 77.5
Phvul.003G229700 Phaseolus vulgaris HOM05D007142 ORTHO05D008983 1.8e-104 382.9 223 80.7
Psat4g079200 Pisum sativum HOM05D007142 ORTHO05D008983 1.8e-104 382.9 236 77.1
Potri.003G089900 Populus trichocarpa HOM05D007142 ORTHO05D008983 2.4e-104 382.5 219 84.0
TAR629G1364 Trochodendron aralioides HOM05D007142 ORTHO05D008983 2.4e-104 382.5 220 83.2
VMungo0251G3176 Vigna mungo HOM05D007142 ORTHO05D008983 3.1e-104 382.1 223 81.2
Manes.17G016003 Manihot esculenta HOM05D007142 ORTHO05D008983 5.3e-104 381.3 238 76.9
Aqoxy3G02453 Aquilegia oxysepala HOM05D007142 ORTHO05D008983 6.9e-104 380.9 236 78.4
TWI15G0113 Tripterygium wilfordii HOM05D007142 ORTHO05D008983 1.5e-103 379.8 223 81.6
CANSAT21G2079 Cannabis sativa HOM05D007142 ORTHO05D008983 2.6e-103 379.0 247 76.1
Medtr4g098620 Medicago truncatula HOM05D007142 ORTHO05D008983 2.6e-103 379.0 237 76.4
Cc08_g02450 Coffea canephora HOM05D007142 ORTHO05D000161 7.6e-103 377.5 240 76.2
arahy.Tifrunner.gnm1.ann1.J3YA34 Arachis hypogaea HOM05D007142 ORTHO05D008983 1.7e-102 376.3 233 76.4
Ah.12g054590 Amaranthus hybridus HOM05D007142 ORTHO05D008983 2.2e-102 375.9 236 75.8
MELO3C013862.2 Cucumis melo HOM05D007142 ORTHO05D008983 6.4e-102 374.4 231 77.9
PSO339G0102 Papaver somniferum HOM05D007142 ORTHO05D008983 5.4e-101 371.3 219 79.0
CsaV3_3G001880 Cucumis sativus L. HOM05D007142 ORTHO05D008983 9.3e-101 370.5 235 74.9
PSO384G0274 Papaver somniferum HOM05D007142 ORTHO05D008983 9.3e-101 370.5 219 78.5
ClCG10G001790 Citrullus lanatus HOM05D007142 ORTHO05D008983 1.2e-100 370.2 235 75.3
Nitab4.5_0014378g0020 Nicotiana tabacum HOM05D007142 ORTHO05D008983 2.7e-100 369.0 219 79.9
EL10Ac5g12171 Beta vulgaris HOM05D007142 ORTHO05D008983 3.5e-100 368.6 236 75.0
PGR031G3753 Punica granatum HOM05D007142 ORTHO05D008983 4.6e-100 368.2 217 80.2
vmacro00342 Vaccinium macrocarpon HOM05D007142 ORTHO05D008983 4.6e-100 368.2 219 80.8
CAN.G201.17 Capsicum annuum HOM05D007142 ORTHO05D008983 1.0e-99 367.1 216 79.2
AUR62018753 Chenopodium quinoa HOM05D007142 ORTHO05D008983 3.0e-99 365.5 237 75.5
Lsat_1_v5_gn_3_16621 Lactuca sativa HOM05D007142 ORTHO05D008983 3.9e-99 365.2 215 80.9
Nitab4.5_0003100g0010 Nicotiana tabacum HOM05D007142 ORTHO05D008983 3.9e-99 365.2 237 74.7
Sed0005643 Sechium edule HOM05D007142 ORTHO05D008983 3.9e-99 365.2 236 75.0
HanXRQChr17g0535721 Helianthus annuus HOM05D007142 ORTHO05D008983 5.1e-99 364.8 215 81.4
SGA_v2.0_scaffold4519G54498 Striga asiatica HOM05D007142 ORTHO05D008983 1.1e-98 363.6 234 74.4
ECA246G1460 Erigeron canadensis HOM05D007142 ORTHO05D008983 4.3e-98 361.7 215 80.0
Sabra03G0059800 Salix brachista HOM05D007142 ORTHO05D008983 1.3e-97 360.1 240 74.2
Sopen06g021290 Solanum pennellii HOM05D007142 ORTHO05D008983 2.1e-97 359.4 216 79.2
Solyc06g061090.3 Solanum lycopersicum HOM05D007142 ORTHO05D008983 2.8e-97 359.0 216 79.2
THA.LOC104807961 Tarenaya hassleriana HOM05D007142 ORTHO05D008983 1.4e-96 356.7 234 73.5
Aa31LG2G13430 Aethionema arabicum HOM05D007142 ORTHO05D008983 2.4e-96 355.9 238 73.1
ATR0049G055 Amborella trichopoda HOM05D007142 ORTHO05D008983 2.4e-96 355.9 220 78.2
Cpa.g.sc665.3 Carica papaya HOM05D007142 ORTHO05D008983 2.4e-96 355.9 218 77.5
Sc10g0005600 Simmondsia chinensis HOM05D007142 ORTHO05D008983 3.1e-96 355.5 216 77.8
A09p33690 Brassica napus HOM05D007142 ORTHO05D008983 5.3e-96 354.8 238 73.9
C05p31960 Brassica napus HOM05D007142 ORTHO05D008983 2.0e-95 352.8 238 73.5
BolC5t31922H Brassica oleracea HOM05D007142 ORTHO05D008983 2.0e-95 352.8 238 73.5
SalBow4G2536 Salvia bowleyana HOM05D007142 ORTHO05D008983 2.6e-95 352.4 219 76.3
BraA09t38918Z Brassica rapa HOM05D007142 ORTHO05D008983 3.4e-95 352.1 238 73.5
BcaC05g27290 Brassica carinata HOM05D007142 ORTHO05D008983 5.8e-95 351.3 238 73.1
Migut.F01892 Erythranthe guttata HOM05D007142 ORTHO05D008983 7.6e-95 350.9 227 74.9
Thhalv10008641m.g Eutrema salsugineum HOM05D007142 ORTHO05D008983 3.8e-94 348.6 238 71.8
AT1G32520 Arabidopsis thaliana HOM05D007142 ORTHO05D008983 4.9e-94 348.2 221 76.5
CDE11G1210 Ceratophyllum demersum HOM05D007142 ORTHO05D008983 6.5e-94 347.8 223 74.0
CARHR031970 Cardamine hirsuta HOM05D007142 ORTHO05D008983 2.5e-93 345.9 240 71.7
HPP92_004467 Vanilla planifolia HOM05D007142 ORTHO05D008983 4.2e-93 345.1 226 71.2
MSTRG.9125 Avicennia marina HOM05D007142 ORTHO05D008983 1.2e-92 343.6 220 73.6
BcaB07g32947 Brassica carinata HOM05D007142 ORTHO05D008983 3.5e-92 342.0 216 74.5
HPP92_004488 Vanilla planifolia HOM05D007142 ORTHO05D008983 6.0e-92 341.3 226 70.4
AL1G46770 Arabidopsis lyrata HOM05D007142 ORTHO05D008983 1.3e-91 340.1 241 71.8
Carub.0001s3093 Capsella rubella HOM05D007142 ORTHO05D008983 6.7e-91 337.8 242 69.8
Peaxi162Scf00603g00413 Petunia axillaris HOM05D007142 ORTHO05D008983 4.3e-90 335.1 237 70.5
Lj2C242T12 Lonicera japonica HOM05D007142 ORTHO05D008983 9.6e-90 334.0 174 90.2
Rhsim11G0012900 Rhododendron simsii HOM05D007142 ORTHO05D008983 1.5e-87 326.6 179 86.0
AUR62007246 Chenopodium quinoa HOM05D007142 ORTHO05D008983 4.5e-87 325.1 208 75.0
Sp1g28380 Schrenkiella parvula HOM05D007142 ORTHO05D008983 2.9e-86 322.4 203 76.4
Nn6g33627 Nelumbo nucifera HOM05D007142 ORTHO05D008983 3.8e-86 322.0 174 86.2
Mapoly0005s0008 Marchantia polymorpha HOM05D007142 ORTHO05D008983 6.5e-86 321.2 227 66.5
Zm00001eb090700 Zea mays HOM05D007142 ORTHO05D008983 1.0e-83 313.9 223 69.1
PGSC0003DMG400002104 Solanum tuberosum HOM05D007142 ORTHO05D008983 1.3e-83 313.5 198 75.3
MBI04_g22954_MAGBIO Magnolia biondii HOM05D007142 ORTHO05D008983 2.4e-80 302.8 172 82.6
AagrBONN_evm.TU.Sc2ySwM_362.655 Anthoceros agrestis HOM05D007142 ORTHO05D008983 3.4e-79 298.9 231 65.4
arahy.Tifrunner.gnm1.ann1.KYR2NU Arachis hypogaea HOM05D007142 ORTHO05D008983 7.7e-79 297.7 230 65.2
unitig_32.g11901 Utricularia gibba HOM05D007142 ORTHO05D008983 7.7e-79 297.7 180 78.3
SEGI_34411 Sequoiadendron giganteum HOM05D007142 ORTHO05D008983 6.1e-76 288.1 191 70.7
Gohir.A08G158100 Gossypium hirsutum HOM05D007142 ORTHO05D008983 2.6e-71 272.7 181 72.9
Os11g0220300 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 2.9e-46 189.5 148 62.2
SMO367G0110 Selaginella moellendorffii HOM05D007142 ORTHO05D008983 3.6e-44 182.6 127 67.7
PRCOL_00005169 Prasinoderma coloniale HOM05D007142 ORTHO05D008983 1.4e-43 180.6 191 50.8
MCO11G179 Micromonas commoda HOM05D007142 ORTHO05D008983 1.6e-28 130.6 189 40.7
Os07g0120051 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 1.7e-25 120.6 120 54.2
Hma1.2p1_0585F.1_g183620 Hydrangea macrophylla HOM05D007142 ORTHO05D008983 5.4e-24 115.5 62 88.7
Glyma.05G112900 Glycine max HOM05D007142 ORTHO05D008983 7.8e-23 111.7 174 41.4
Oeu029960.1 Olea europaea HOM05D007142 ORTHO05D008983 1.9e-21 107.1 62 83.9
Cre10.g446500 Chlamydomonas reinhardtii HOM05D007142 ORTHO05D008983 2.6e-18 96.7 176 36.4
Dinv25200 Davidia involucrata HOM05D007142 ORTHO05D008983 3.2e-16 89.7 149 41.6
MCO05G635 Micromonas commoda HOM05D007142 ORTHO05D008983 8.1e-12 75.1 193 28.5
Os06g0318400 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 1.7e-09 67.4 65 52.3
Os11g0275900 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 4.6e-07 59.3 44 70.5


User provided reference genes

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