Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.6e-163 579.7 336 100.0
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 3.7e-149 531.9 334 92.5
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.7e-149 531.9 334 92.8
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.2e-147 526.9 334 89.8
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 9.5e-145 517.3 334 88.9
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.4e-143 513.5 334 88.9
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 7.8e-123 444.5 332 77.4
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 3.7e-117 425.6 344 72.7
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.3e-109 400.6 334 69.8
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.0e-106 391.0 329 71.7
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.0e-106 391.0 325 70.5
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 1.1e-105 387.5 330 70.3
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 1.5e-105 387.1 325 71.1
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.5e-105 387.1 327 68.2
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 3.3e-105 386.0 334 72.5
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.6e-104 383.6 334 69.5
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.2e-102 377.5 340 69.7
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 7.6e-102 374.8 332 67.8
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 9.9e-102 374.4 331 69.2
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 2.2e-101 373.2 330 69.4
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 6.4e-101 371.7 332 68.1
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 8.4e-101 371.3 329 66.6
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.1e-100 370.9 332 68.1
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 1.4e-100 370.5 332 66.9
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.9e-100 370.2 323 65.6
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 2.4e-100 369.8 334 65.3
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 4.2e-100 369.0 328 68.3
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 5.4e-100 368.6 333 66.7
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 5.4e-100 368.6 332 66.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.6e-99 367.1 329 64.7
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 4.6e-99 365.5 329 65.3
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 7.8e-99 364.8 334 64.1
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.7e-98 363.6 328 63.1
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 3.9e-98 362.5 332 66.6
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 6.6e-98 361.7 327 63.9
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 8.7e-98 361.3 332 66.9
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 1.5e-97 360.5 333 59.5
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 9.6e-97 357.8 337 63.2
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 1.6e-96 357.1 332 63.6
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.6e-96 357.1 325 68.6
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 2.1e-96 356.7 330 63.0
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 2.8e-96 356.3 328 68.6
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 6.2e-96 355.1 327 63.9
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 9.0e-95 351.3 331 63.4
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 2.6e-94 349.7 329 61.7
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 5.8e-94 348.6 331 59.8
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 2.9e-93 346.3 335 63.0
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 3.8e-93 345.9 329 64.4
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 4.9e-93 345.5 333 62.8
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.1e-92 344.4 324 67.3
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.1e-92 344.4 331 55.6
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 4.2e-92 342.4 335 59.7
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 5.4e-92 342.0 334 61.7
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 9.3e-92 341.3 331 62.2
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 2.7e-91 339.7 329 58.4
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 2.7e-91 339.7 331 62.5
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 3.5e-91 339.3 328 60.7
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 4.6e-91 339.0 324 65.1
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 2.3e-90 336.7 326 63.2
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 3.0e-90 336.3 329 57.8
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 5.1e-90 335.5 334 59.9
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 6.7e-90 335.1 334 59.9
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 6.7e-90 335.1 334 59.9
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 8.7e-90 334.7 334 55.4
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.5e-89 334.0 328 62.5
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.9e-89 333.6 334 62.0
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.3e-89 332.8 325 55.1
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 7.4e-89 331.6 332 59.0
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 4.8e-88 328.9 328 60.4
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.1e-87 327.8 333 58.9
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 1.4e-87 327.4 334 54.2
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 1.4e-87 327.4 334 54.2
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 1.4e-87 327.4 403 47.9
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.0e-87 325.9 329 53.8
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.2e-86 324.3 329 56.2
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 2.6e-86 323.2 334 53.6
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 3.2e-84 316.2 328 53.0
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 4.2e-84 315.8 342 60.2
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 7.1e-84 315.1 188 80.9
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.5e-81 306.6 329 58.4
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 2.1e-80 303.5 328 57.3
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 3.7e-80 302.8 358 58.1
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 3.7e-80 302.8 278 64.7
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 9.0e-79 298.1 190 78.4
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 9.0e-79 298.1 193 74.1
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 2.0e-78 297.0 184 79.3
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 4.5e-78 295.8 278 64.0
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 3.8e-77 292.7 190 74.2
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.9e-77 292.4 307 50.5
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.2e-76 289.7 331 50.2
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.2e-76 289.7 331 50.2
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 3.9e-74 282.7 327 56.0
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 5.1e-74 282.3 277 65.0
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 6.7e-74 282.0 329 49.5
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.5e-73 280.8 337 49.9
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 7.4e-73 278.5 325 56.0
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 6.3e-72 275.4 326 54.0
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.9e-71 271.9 278 57.2
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 6.9e-71 271.9 332 54.5
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 7.7e-70 268.5 329 50.2
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 2.8e-64 250.0 251 64.1
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 9.4e-60 235.0 228 63.2
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 4.7e-59 232.6 189 57.7
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 3.9e-58 229.6 329 46.5
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 1.8e-55 220.7 159 69.2
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 1.1e-49 201.4 145 69.7
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 8.2e-48 195.3 222 48.6
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 3.5e-46 189.9 334 41.6
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 2.9e-45 186.8 139 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 1.5e-44 184.5 313 41.2
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 8.5e-37 158.7 411 36.0
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 6.6e-29 132.5 174 55.2
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 6.6e-29 132.5 126 54.8
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 5.5e-28 129.4 207 42.0
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.0e-27 125.6 78 79.5
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 1.3e-24 118.2 79 73.4
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.3e-21 108.2 350 27.7
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 1.9e-20 104.4 52 96.2
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 9.5e-20 102.1 143 45.5
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 6.1e-19 99.4 135 57.0
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 8.9e-18 95.5 100 57.0
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 7.0e-15 85.9 56 64.3
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 6.0e-14 82.8 168 32.7
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 1.7e-13 81.3 147 36.7
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.3e-13 80.9 81 56.8
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.9e-12 77.8 46 78.3
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 6.8e-10 69.3 49 69.4
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 3.4e-09 67.0 60 58.3
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 4.4e-09 66.6 44 75.0


User provided reference genes

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