Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.5e-138 494.6 251 100.0
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 8.9e-118 427.2 248 86.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.8e-110 401.0 281 75.4
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.4e-102 375.9 251 76.1
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.4e-99 365.9 248 74.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 5.1e-97 358.2 251 72.5
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-93 346.7 238 73.1
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-90 337.0 255 71.0
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.1e-87 326.2 246 69.1
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.3e-86 321.6 247 67.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 5.8e-85 318.2 244 66.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.9e-84 315.1 231 70.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.1e-83 313.9 242 66.9
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.0e-82 308.1 207 72.5
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.0e-81 305.8 212 72.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 6.7e-81 304.7 219 67.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.3e-79 300.4 242 63.2
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.7e-79 298.9 213 69.0
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.7e-79 298.9 211 70.6
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.8e-79 298.5 241 64.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.4e-78 297.0 242 64.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 4.0e-78 295.4 201 71.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 5.3e-78 295.0 235 63.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.3e-78 295.0 211 70.6
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.0e-78 294.3 240 62.5
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 9.0e-78 294.3 211 71.1
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 5.5e-75 285.0 217 67.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.1e-75 284.6 222 65.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.6e-74 283.5 244 62.3
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.1e-74 283.1 211 66.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.1e-74 283.1 242 61.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.7e-74 282.7 222 65.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.0e-74 281.6 251 60.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 7.9e-74 281.2 243 60.1
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.3e-73 280.4 222 63.1
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.3e-73 280.4 251 60.2
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.8e-73 280.0 222 64.9
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 3.9e-73 278.9 245 60.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.9e-73 278.9 230 64.3
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.1e-73 278.5 181 75.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.1e-72 277.3 248 60.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-72 276.9 244 59.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.5e-72 276.9 251 59.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.9e-72 276.6 203 66.5
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.3e-72 275.8 179 74.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.3e-72 275.8 251 60.6
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 7.4e-72 274.6 249 58.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 7.4e-72 274.6 246 60.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 9.6e-72 274.2 243 59.7
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.3e-71 273.9 238 59.2
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.3e-71 273.9 244 60.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.6e-71 273.5 219 63.5
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.6e-71 273.5 249 58.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-71 273.5 185 71.4
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.1e-71 273.1 252 59.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.1e-71 273.1 212 66.5
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.8e-71 272.7 249 58.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.8e-71 271.9 241 57.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.8e-71 271.9 241 57.3
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.2e-71 271.6 251 59.4
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.1e-70 270.8 228 61.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.4e-70 270.4 218 62.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.8e-70 270.0 240 58.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.8e-70 270.0 240 58.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.8e-70 270.0 203 68.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.4e-70 269.6 232 59.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 4.1e-70 268.9 196 67.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 9.0e-70 267.7 249 59.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.2e-69 267.3 178 73.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.5e-69 266.9 215 65.6
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-69 266.9 219 62.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.0e-69 266.5 220 60.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.0e-69 266.5 249 57.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-69 266.2 219 63.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.8e-69 265.0 219 60.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.8e-69 265.0 219 60.3
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 7.6e-69 264.6 216 62.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.0e-68 264.2 212 64.6
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-68 263.8 222 60.4
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-68 263.8 222 60.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.7e-68 263.5 219 63.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.2e-68 263.1 163 80.4
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.2e-68 263.1 222 59.9
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.8e-68 262.3 217 62.2
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 6.5e-68 261.5 190 66.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.4e-68 261.2 244 58.6
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 8.4e-68 261.2 200 67.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.2e-67 258.8 189 66.1
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 9.3e-67 257.7 183 68.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.3e-67 257.7 245 58.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.1e-66 256.5 208 62.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.5e-66 255.8 208 60.1
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 3.5e-66 255.8 211 62.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 4.6e-66 255.4 228 57.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 7.9e-66 254.6 239 58.6
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.1e-65 251.9 177 69.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.6e-63 246.9 207 58.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.2e-63 246.5 205 62.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.8e-63 246.1 145 82.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.8e-62 243.4 152 77.6
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.1e-62 242.7 152 77.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.3e-62 241.9 207 61.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.6e-61 239.6 150 79.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.3e-60 237.3 177 65.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.8e-60 235.7 147 78.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-60 235.7 154 74.0
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.8e-60 235.7 214 59.8
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.8e-60 235.7 150 72.7
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 5.0e-60 235.3 152 71.7
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.1e-59 234.2 151 74.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.9e-59 233.4 191 62.3
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.2e-59 232.3 180 66.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.6e-58 229.2 152 74.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.1e-58 228.4 206 58.3
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.9e-58 228.0 200 56.5
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.8e-57 226.9 179 63.7
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.8e-57 226.9 148 70.9
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-56 224.2 205 56.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.5e-56 223.8 240 55.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-56 223.8 179 62.0
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.3e-55 220.7 186 62.4
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 4.8e-55 218.8 124 83.1
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.8e-54 216.9 161 64.6
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 9.1e-54 214.5 187 56.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 8.5e-52 208.0 201 59.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.1e-50 201.8 199 54.8
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.3e-48 196.1 263 45.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.8e-47 192.2 202 56.9
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.1e-46 191.0 190 52.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 3.1e-46 189.5 143 68.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 4.1e-46 189.1 259 46.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-45 187.6 251 45.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 4.5e-45 185.7 168 57.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.0e-44 184.5 166 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.9e-44 183.0 142 58.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.5e-43 180.6 180 50.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.6e-42 176.0 139 56.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.5e-40 168.3 213 45.1
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 6.3e-39 165.2 171 53.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 7.0e-38 161.8 146 61.6
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.0e-36 155.6 187 47.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.7e-34 149.1 164 54.3
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.2e-32 144.4 90 80.0
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.0e-29 133.7 128 53.9
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.7e-29 133.3 145 53.8
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.7e-26 123.2 87 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.2e-21 107.8 79 60.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-17 94.4 148 35.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.4e-17 94.4 141 36.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 7.5e-16 88.6 131 35.9
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.2e-13 81.3 140 35.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.8e-13 78.6 155 29.0
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.3e-12 77.0 83 53.0
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-10 71.2 87 43.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.8e-09 67.4 166 30.7
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.9e-09 65.1 120 30.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.5e-08 64.3 118 29.7
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 3.4e-08 63.2 94 41.5
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.4e-06 57.8 59 54.2
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-06 57.4 83 44.6


User provided reference genes

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