Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-36 154.8 67 100.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 7.1e-30 133.3 57 100.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 6.6e-28 126.7 57 89.5
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.6e-28 126.7 57 89.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.6e-28 126.7 57 89.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.8e-25 118.6 57 82.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.9e-25 116.7 57 84.2
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.8e-23 110.9 57 77.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.4e-22 108.2 57 75.4
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 3.2e-22 107.8 57 77.2
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 4.2e-22 107.5 57 78.9
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 9.3e-22 106.3 57 73.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-21 105.5 57 71.9
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-21 105.5 57 71.9
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-21 105.5 57 71.9
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.5e-21 104.4 54 77.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.5e-21 104.4 54 74.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 4.6e-21 104.0 57 71.9
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.6e-21 104.0 54 77.8
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.9e-21 103.2 57 70.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 7.9e-21 103.2 57 70.2
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.0e-20 102.8 54 75.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.0e-20 102.8 61 67.2
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.0e-20 102.8 57 70.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.3e-20 102.4 57 68.4
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.3e-20 102.4 57 71.9
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.3e-20 102.4 53 79.2
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.8e-20 102.1 54 77.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.3e-20 101.7 54 74.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.3e-20 101.7 54 74.1
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.9e-20 100.9 57 71.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 6.7e-20 100.1 54 70.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 6.7e-20 100.1 54 70.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 6.7e-20 100.1 54 70.4
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.7e-20 100.1 57 75.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.1e-19 99.4 56 71.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.1e-19 99.4 54 70.4
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-19 99.4 57 68.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.1e-19 99.4 54 72.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.5e-19 99.0 57 68.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.5e-19 99.0 54 72.2
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-19 98.6 57 71.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.5e-19 98.2 54 70.4
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.5e-19 98.2 57 68.4
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.5e-19 98.2 54 70.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 3.3e-19 97.8 54 72.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 4.3e-19 97.4 53 73.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.6e-19 97.1 57 68.4
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.6e-19 97.1 57 70.2
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 5.6e-19 97.1 57 66.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 5.6e-19 97.1 54 72.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 7.4e-19 96.7 57 70.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.6e-19 96.3 54 70.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 9.6e-19 96.3 57 64.9
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 9.6e-19 96.3 57 66.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.3e-18 95.9 57 68.4
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.3e-18 95.9 54 68.5
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.3e-18 95.9 54 68.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.6e-18 95.5 54 68.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.6e-18 95.5 57 66.7
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.1e-18 95.1 54 72.2
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.1e-18 95.1 54 68.5
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.8e-18 94.7 54 68.5
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.8e-18 94.7 54 68.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.6e-18 94.4 57 66.7
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.6e-18 94.4 57 68.4
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-18 94.0 57 66.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 4.8e-18 94.0 57 66.7
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 4.8e-18 94.0 57 68.4
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 6.2e-18 93.6 57 66.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 8.1e-18 93.2 57 66.7
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 8.1e-18 93.2 57 66.7
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 8.1e-18 93.2 57 66.7
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-17 92.8 57 66.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-17 92.8 57 68.4
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-17 92.8 57 64.9
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-17 92.8 57 64.9
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-17 92.8 57 68.4
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.1e-17 92.8 54 66.7
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.4e-17 92.4 54 70.4
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.4e-17 92.4 54 68.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.8e-17 92.0 54 66.7
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.8e-17 92.0 54 66.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.8e-17 92.0 53 69.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.4e-17 91.7 54 66.7
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.4e-17 91.7 57 66.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-17 91.3 57 66.7
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 4.0e-17 90.9 54 66.7
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 5.3e-17 90.5 57 66.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 5.3e-17 90.5 57 66.7
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-17 90.5 57 66.7
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.3e-17 90.5 57 63.2
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 6.9e-17 90.1 54 70.4
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 6.9e-17 90.1 54 64.8
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 9.0e-17 89.7 54 66.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.2e-16 89.4 56 64.3
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-16 89.0 54 66.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-16 88.6 54 64.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-16 88.2 58 63.8
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.4e-16 87.8 54 63.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.5e-16 87.4 54 63.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.5e-16 87.4 54 64.8
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.8e-16 87.0 54 64.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.8e-16 87.0 54 64.8
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 7.6e-16 86.7 54 64.8
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 7.6e-16 86.7 53 66.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 9.9e-16 86.3 54 63.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 9.9e-16 86.3 57 63.2
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-15 85.9 54 63.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-15 85.9 54 63.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-15 85.9 54 63.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.8e-15 84.3 54 66.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.4e-15 83.6 54 61.1
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 6.4e-15 83.6 54 61.1
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 6.4e-15 83.6 54 61.1
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.4e-15 83.2 45 71.1
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.1e-14 82.8 54 59.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-14 82.4 54 59.3
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-14 81.6 54 61.1
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-13 79.3 44 70.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-13 77.8 49 67.3
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 7.9e-13 76.6 41 73.2
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 4.3e-11 70.9 30 100.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.4e-09 65.1 36 72.2
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.6e-08 61.6 46 54.3
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 5.8e-08 60.5 56 44.6
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.3e-07 59.3 31 74.2
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.5e-06 55.1 48 52.1
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 5.5e-06 53.9 54 44.4


User provided reference genes

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