Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-136 488.8 243 100.0
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 2.6e-122 442.2 240 92.5
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 1.0e-62 244.2 238 50.4
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 6.7e-62 241.5 218 52.8
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-56 224.2 236 44.5
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 4.2e-56 222.2 222 45.9
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 1.6e-55 220.3 206 51.5
RcHm_v2.0_Chr1g0379271 Rosa chinensis HOM05D006849 ORTHO05D003348 5.3e-51 205.3 197 49.7
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.9e-42 175.3 222 42.3
FAN06G4964 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.9e-41 172.9 208 42.8
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.6e-39 166.0 232 40.1
FAN26G0218 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.3e-38 163.3 223 43.9
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-37 160.2 223 42.6
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-37 159.8 226 40.7
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 4.4e-37 159.1 226 40.3
RcHm_v2.0_Chr2g0135141 Rosa chinensis HOM05D006849 ORTHO05D003348 7.5e-37 158.3 110 60.0
FAN08G0186 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-36 157.5 197 43.7
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 3.7e-36 156.0 186 42.5
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 1.4e-35 154.1 223 41.3
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-34 151.0 208 41.3
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.5e-33 145.2 208 40.4
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-29 133.7 176 40.9
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-29 133.3 217 38.2
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-27 126.7 104 53.8
FAN21G0813 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.1e-27 125.9 161 43.5
RcHm_v2.0_Chr5g0004901 Rosa chinensis HOM05D006849 ORTHO05D003348 5.9e-26 122.1 106 49.1
MD17G1262000 Malus domestica HOM05D006849 ORTHO05D003348 7.7e-26 121.7 226 30.1
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 1.7e-25 120.6 225 32.4
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 3.8e-25 119.4 173 40.5
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.0e-25 119.0 147 42.2
FAN26G2996 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.6e-25 118.6 177 39.0
FAN27G1530 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-24 117.9 157 40.1
FAN27G2674 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-23 114.4 167 37.1
MD08G1229500 Malus domestica HOM05D006849 ORTHO05D003348 1.6e-23 114.0 153 37.3
FAN21G3588 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.1e-23 112.1 131 48.1
FvH4_3g07130 Fragaria vesca HOM05D006849 ORTHO05D003348 1.2e-21 107.8 136 47.8
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 2.6e-21 106.7 141 44.0
FvH4_3g24350 Fragaria vesca HOM05D006849 ORTHO05D003348 5.7e-21 105.5 132 48.5
FAN09G2827 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.7e-21 105.5 122 46.7
RcHm_v2.0_Chr1g0378751 Rosa chinensis HOM05D006849 ORTHO05D003348 1.7e-20 104.0 119 47.1
FvH4_5g31990 Fragaria vesca HOM05D006849 ORTHO05D003348 3.7e-20 102.8 108 46.3
FAN14G5332 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.3e-20 102.1 120 50.0
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.8e-19 100.5 117 39.3
FAN23G1018 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.4e-19 100.1 128 46.1
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 4.1e-19 99.4 235 26.4
FvH4_6g33630 Fragaria vesca HOM05D006849 ORTHO05D003348 4.1e-19 99.4 136 45.6
FAN16G1061 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.2e-18 97.8 128 45.3
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.7e-18 96.7 184 29.3
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.5e-18 96.3 178 29.2
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.5e-18 95.9 220 26.8
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-17 94.7 123 42.3
FAN06G3145 Fragaria x ananassa HOM05D013178 ORTHO05D019138 1.0e-17 94.7 124 41.9
FAN18G1198 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-17 94.7 73 54.8
FAN16G3151 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.3e-17 93.6 109 43.1
FAN08G3609 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.9e-17 92.8 121 43.0
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.9e-17 92.8 121 42.1
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 8.6e-17 91.7 190 29.5
MD04G1002000 Malus domestica HOM05D029265 ORTHO05D003348 8.6e-17 91.7 182 28.0
FAN24G2869 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-16 91.3 197 35.0
FAN26G2619 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.5e-16 90.1 84 50.0
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 5.6e-16 89.0 182 30.8
FAN20G1145 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.5e-16 88.2 153 37.9
MD14G1125700 Malus domestica HOM05D006849 ORTHO05D003348 9.5e-16 88.2 116 36.2
MD07G1020000 Malus domestica HOM05D006849 ORTHO05D003348 2.1e-15 87.0 96 36.5
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.8e-15 86.7 156 30.1
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.8e-15 86.7 184 27.2
FAN20G2082 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.7e-15 85.9 127 40.9
FAN03G1780 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.1e-15 85.5 123 42.3
FAN21G2341 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.1e-15 85.5 176 32.4
FvH4_4g18140 Fragaria vesca HOM05D006849 ORTHO05D003348 8.0e-15 85.1 101 47.5
RcHm_v2.0_Chr5g0028311 Rosa chinensis HOM05D006849 ORTHO05D003348 8.0e-15 85.1 73 46.6
FvH4_6g30401 Fragaria vesca HOM05D006849 ORTHO05D003348 1.8e-14 84.0 134 37.3
FAN09G4859 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.2e-14 82.4 182 27.5
FAN12G0440 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.2e-14 82.4 117 35.9
FAN05G3326 Fragaria x ananassa HOM05D007856 ORTHO05D003348 8.9e-14 81.6 224 27.2
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-13 80.5 152 36.8
FAN21G3637 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.6e-13 80.1 171 26.9
FAN27G2295 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-12 77.8 134 38.1
FvH4_2g06412 Fragaria vesca HOM05D006849 ORTHO05D003348 1.7e-12 77.4 110 38.2
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.2e-12 77.0 184 26.6
RcHm_v2.0_Chr7g0230621 Rosa chinensis HOM05D006849 ORTHO05D003348 2.2e-12 77.0 64 51.6
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.2e-12 77.0 240 26.7
RcHm_v2.0_Chr5g0067561 Rosa chinensis HOM05D006849 ORTHO05D003348 8.3e-12 75.1 64 50.0
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-11 74.7 172 29.1
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-11 74.7 172 29.1
Thecc.09G096600 Theobroma cacao HOM05D000096 ORTHO05D000045 1.1e-11 74.7 145 31.0
FAN05G0189 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-11 74.3 87 37.9
FAN15G2956 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-11 73.9 85 43.5
FAN16G1224 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-11 73.9 85 43.5
FAN16G3375 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-11 73.9 85 43.5
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 1.9e-11 73.9 145 31.0
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 3.2e-11 73.2 145 31.0
FAN20G0190 Fragaria x ananassa HOM05D007856 ORTHO05D003348 7.0e-11 72.0 184 26.1
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 7.0e-11 72.0 154 27.3
Potri.014G182232 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.6e-10 70.9 160 25.0
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.6e-10 70.9 170 28.2
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 1.6e-10 70.9 145 30.3
FAN11G1356 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.0e-10 70.5 183 26.8
FAN12G1343 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.0e-10 70.5 190 24.7
FAN25G2444 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-10 70.5 91 39.6
Potri.006G172600 Populus trichocarpa HOM05D018388 ORTHO05D003348 2.7e-10 70.1 160 25.0
FAN21G2011 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.5e-10 69.7 100 38.0
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 4.6e-10 69.3 84 41.7
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 4.6e-10 69.3 140 28.6
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 1.0e-09 68.2 199 25.6
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.0e-09 68.2 175 23.4
FvH4_5g29621 Fragaria vesca HOM05D006849 ORTHO05D003348 1.3e-09 67.8 92 34.8
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 2.3e-09 67.0 117 29.9
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 3.0e-09 66.6 178 27.0
Potri.003G004301 Populus trichocarpa HOM05D018388 ORTHO05D003348 3.0e-09 66.6 145 25.5
DCAR_011057 Daucus carota HOM05D002907 ORTHO05D000065 3.9e-09 66.2 117 30.8
FAN15G0345 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.0e-09 65.9 119 37.0
TWI09G1314 Tripterygium wilfordii HOM05D002907 ORTHO05D003348 8.6e-09 65.1 137 29.2
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 1.5e-08 64.3 168 28.0
Lj7A628T41 Lonicera japonica HOM05D002907 ORTHO05D000065 1.5e-08 64.3 198 21.2
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 2.5e-08 63.5 176 26.1
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 2.5e-08 63.5 135 28.9
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 3.3e-08 63.2 193 27.5
C02p32000 Brassica napus HOM05D000305 ORTHO05D000065 7.3e-08 62.0 188 27.1
Lsat_1_v5_gn_1_127421 Lactuca sativa HOM05D052696 ORTHO05D010547 7.3e-08 62.0 137 27.0
C02p11180 Brassica napus HOM05D000305 ORTHO05D000065 9.5e-08 61.6 188 26.6
arahy.Tifrunner.gnm1.ann1.39QWAJ Arachis hypogaea HOM05D008664 ORTHO05D000174 1.2e-07 61.2 242 24.0
BcaC08g43011 Brassica carinata HOM05D000305 ORTHO05D000065 1.2e-07 61.2 187 26.2
C05p06980 Brassica napus HOM05D000305 ORTHO05D000065 1.2e-07 61.2 187 26.7
C06p02640 Brassica napus HOM05D000305 ORTHO05D000065 1.2e-07 61.2 187 26.2
FAN24G2652 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.2e-07 61.2 154 27.3
MD10G1198900 Malus domestica HOM05D006849 ORTHO05D003348 1.2e-07 61.2 99 32.3
DCAR_025606 Daucus carota HOM05D012849 ORTHO05D000065 1.6e-07 60.8 152 26.3
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 1.6e-07 60.8 110 31.8
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 2.1e-07 60.5 172 25.6
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 2.1e-07 60.5 172 25.6
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 2.1e-07 60.5 172 25.6
BcaC03g15517 Brassica carinata HOM05D000305 ORTHO05D000065 2.1e-07 60.5 187 26.2
A04p12480 Brassica napus HOM05D000305 ORTHO05D000065 2.8e-07 60.1 188 27.1
DCAR_031322 Daucus carota HOM05D002907 ORTHO05D000065 2.8e-07 60.1 119 29.4
C07p03560 Brassica napus HOM05D000305 ORTHO05D000065 3.6e-07 59.7 186 26.3
BcaC03g17608 Brassica carinata HOM05D000305 ORTHO05D000065 4.7e-07 59.3 188 26.6
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 4.7e-07 59.3 107 28.0
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.7e-07 59.3 119 26.1
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 6.2e-07 58.9 172 25.6
MD02G1249900 Malus domestica HOM05D006849 ORTHO05D003348 6.2e-07 58.9 91 28.6
FAN10G1627 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.0e-07 58.5 71 38.0
FAN24G2379 Fragaria x ananassa HOM05D007856 ORTHO05D003348 8.0e-07 58.5 95 30.5
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.1e-06 58.2 172 25.6
QL01p044581 Quercus lobata HOM05D002907 ORTHO05D005554 1.8e-06 57.4 99 32.3
QL01p044591 Quercus lobata HOM05D002907 ORTHO05D005554 1.8e-06 57.4 99 32.3
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 1.8e-06 57.4 99 32.3
C05p38530 Brassica napus HOM05D000305 ORTHO05D000065 2.3e-06 57.0 187 25.1
RcHm_v2.0_Chr1g0339991 Rosa chinensis HOM05D048603 ORTHO05D003348 4.0e-06 56.2 45 46.7
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.0e-06 56.2 231 21.6
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.0e-06 56.2 231 21.6
HanXRQChr15g0487781 Helianthus annuus HOM05D003964 ORTHO05D000174 5.2e-06 55.8 144 25.0
MD05G1215800 Malus domestica HOM05D006849 ORTHO05D003348 5.2e-06 55.8 89 29.2
arahy.Tifrunner.gnm1.ann1.UD52B8 Arachis hypogaea HOM05D008664 ORTHO05D000174 6.8e-06 55.5 174 24.1
BcaC08g44031 Brassica carinata HOM05D000305 ORTHO05D000065 6.8e-06 55.5 188 27.1
A03p47920 Brassica napus HOM05D000305 ORTHO05D000065 6.8e-06 55.5 118 27.1
BraA03t13901Z Brassica rapa HOM05D000305 ORTHO05D000065 6.8e-06 55.5 118 27.1
HanXRQChr11g0337461 Helianthus annuus HOM05D011053 ORTHO05D010547 6.8e-06 55.5 182 25.3
arahy.Tifrunner.gnm1.ann1.E8Q8VF Arachis hypogaea HOM05D008664 ORTHO05D000174 8.9e-06 55.1 171 23.4
DCAR_004801 Daucus carota HOM05D002907 ORTHO05D000065 8.9e-06 55.1 119 29.4
Hma1.2p1_0006F.1_g004680 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.9e-06 55.1 124 26.6
SGA_v2.0_scaffold244G44377 Striga asiatica HOM05D010852 ORTHO05D002376 8.9e-06 55.1 113 31.9
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 8.9e-06 55.1 228 21.1


User provided reference genes

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