Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 4.1e-248 860.9 429 100.0
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 8.1e-236 820.1 429 94.9
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.4e-232 809.3 429 93.5
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-232 808.5 429 93.9
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 9.6e-221 770.0 429 88.3
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 2.0e-218 762.3 428 88.1
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 7.6e-218 760.4 429 87.2
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.2e-217 758.8 428 87.1
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 8.4e-217 756.9 428 87.1
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.4e-217 756.9 428 87.1
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-216 755.4 428 86.9
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.5e-215 751.5 428 86.9
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.7e-214 749.2 429 86.2
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 5.1e-214 747.7 429 86.0
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 1.4e-208 729.6 428 84.1
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 1.4e-208 729.6 429 83.2
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 5.1e-206 721.1 429 82.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 5.1e-206 721.1 429 83.0
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 8.7e-206 720.3 429 82.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 7.4e-205 717.2 430 81.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.3e-204 716.5 429 82.3
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.7e-204 714.9 429 82.1
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 1.4e-203 713.0 430 81.9
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.4e-203 713.0 429 82.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.4e-203 713.0 429 82.1
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.5e-202 709.5 429 82.1
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.5e-202 709.5 429 80.4
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 2.0e-202 709.1 428 80.8
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 2.6e-202 708.8 428 80.4
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 4.5e-202 708.0 429 81.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 4.5e-202 708.0 429 80.9
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.7e-201 706.1 429 80.9
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.2e-201 705.7 429 80.9
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.2e-201 705.7 429 81.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 6.4e-201 704.1 415 83.6
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 6.4e-201 704.1 429 81.8
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 7.1e-200 700.7 429 80.2
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.6e-199 699.5 417 82.3
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 7.9e-199 697.2 429 80.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.0e-198 696.8 429 79.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.1e-197 693.3 429 80.0
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 1.5e-197 693.0 428 80.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 5.6e-197 691.0 429 79.5
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 9.6e-197 690.3 429 78.6
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.3e-196 689.9 422 80.6
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 2.1e-196 689.1 429 78.6
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.8e-196 688.7 429 78.6
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 3.7e-196 688.3 429 78.1
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.1e-195 686.8 429 79.0
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 3.4e-194 681.8 429 77.4
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 2.2e-193 679.1 429 77.6
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.9e-193 678.7 416 79.6
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.9e-193 678.7 429 76.7
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 2.5e-192 675.6 429 78.3
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 4.2e-192 674.9 429 77.4
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 9.3e-192 673.7 430 76.3
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.7e-191 672.2 429 75.8
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 6.0e-191 671.0 429 75.5
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.8e-190 669.5 429 75.8
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.3e-190 669.1 429 76.5
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 3.0e-190 668.7 416 78.1
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.1e-189 666.8 429 77.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-189 666.4 429 77.9
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 3.3e-189 665.2 429 76.2
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 7.4e-189 664.1 429 76.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 9.7e-189 663.7 429 77.6
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.8e-188 662.1 430 75.1
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.3e-188 661.0 429 77.4
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.1e-187 660.2 429 76.7
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.4e-187 659.8 429 77.2
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 5.3e-187 657.9 429 75.5
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 9.0e-187 657.1 429 76.9
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.0e-185 653.7 429 76.2
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 5.0e-185 651.4 429 75.1
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.5e-184 649.0 429 73.2
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 2.5e-184 649.0 429 73.4
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 7.2e-184 647.5 423 76.6
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-183 646.0 429 74.8
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-183 646.0 429 74.6
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 4.6e-183 644.8 429 74.1
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.0e-182 643.7 429 73.9
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-182 642.9 429 74.4
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 5.7e-181 637.9 429 73.4
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 2.2e-180 636.0 429 74.1
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 4.8e-180 634.8 428 74.5
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.8e-179 632.9 428 74.3
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.8e-179 632.9 429 73.4
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.4e-179 632.5 430 71.9
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.1e-179 632.1 429 73.4
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.3e-179 631.3 430 72.8
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.0e-178 629.4 429 73.7
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.0e-177 627.1 429 74.1
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.0e-177 627.1 429 74.4
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 2.2e-177 625.9 429 74.1
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 2.9e-177 625.5 429 73.0
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.8e-177 625.2 429 72.3
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.5e-177 624.4 413 74.1
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.5e-177 624.4 429 72.5
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 6.5e-177 624.4 429 73.7
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.4e-176 623.2 430 71.6
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 3.2e-176 622.1 429 70.4
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.2e-176 621.7 429 71.8
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.6e-175 619.8 429 73.4
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 3.0e-174 615.5 417 72.4
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 3.9e-174 615.1 431 71.5
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 9.7e-173 610.5 429 73.2
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.3e-172 610.1 430 71.9
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-171 607.1 429 68.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 2.5e-168 595.9 428 67.3
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.6e-167 593.2 431 69.8
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 8.8e-166 587.4 349 81.7
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 5.3e-163 578.2 429 69.0
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 3.5e-162 575.5 429 66.7
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 8.5e-161 570.9 427 66.3
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 2.1e-159 566.2 431 66.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.8e-156 555.8 384 69.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.8e-155 553.1 429 64.3
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.2e-153 546.2 429 62.7
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 5.0e-153 545.0 433 64.0
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.9e-152 543.1 429 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 4.3e-136 488.8 432 55.3
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.1e-135 486.5 433 54.7
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 4.6e-130 468.8 411 61.1
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.9e-128 463.4 403 56.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.4e-125 452.2 259 82.6
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 6.6e-121 438.3 335 65.1
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 1.7e-116 423.7 443 47.2
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.4e-110 404.1 433 48.5
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.1e-99 365.2 418 50.2
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.0e-93 347.1 411 49.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.3e-88 329.3 377 54.1
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.6e-87 327.4 465 40.9
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.8e-86 323.9 300 53.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.4e-86 323.6 276 63.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 5.5e-83 312.4 381 49.6
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 3.9e-73 279.6 413 39.0
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.8e-70 270.8 326 42.3
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.9e-68 263.5 243 58.8
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 7.4e-48 195.7 363 37.2
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 4.0e-41 173.3 239 46.4
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.3e-31 141.7 494 23.9
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 7.7e-29 132.5 137 56.2
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 4.7e-18 96.7 92 63.0
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 8.9e-09 65.9 59 55.9
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 2.0e-08 64.7 54 63.0
Cre04.g217914 Chlamydomonas reinhardtii HOM05D012385 ORTHO05D014380 8.3e-07 59.3 199 30.7


User provided reference genes

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