Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.3e-176 622.9 303 100.0
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 4.2e-162 574.7 303 92.7
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 7.1e-162 573.9 303 93.1
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.1e-159 566.6 296 93.9
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.5e-146 522.3 303 83.5
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.7e-142 508.4 298 81.9
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.1e-141 506.9 298 81.2
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.4e-141 506.5 299 81.3
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 6.9e-141 504.2 297 81.1
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 9.0e-141 503.8 298 80.2
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 9.0e-141 503.8 298 80.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.0e-140 502.7 297 80.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 5.9e-140 501.1 300 80.3
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 7.6e-140 500.7 299 80.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 2.2e-139 499.2 303 78.5
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 8.5e-139 497.3 286 82.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.4e-138 496.5 298 80.2
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.5e-138 494.6 300 78.0
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.1e-137 492.7 297 80.1
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.6e-137 491.5 301 77.1
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 4.6e-137 491.5 299 78.3
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 4.6e-137 491.5 287 80.5
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 4.6e-137 491.5 297 79.1
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.3e-136 490.0 297 78.1
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 5.1e-136 488.0 324 74.1
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.9e-135 486.1 280 81.1
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 9.7e-135 483.8 298 77.2
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 9.7e-135 483.8 302 78.1
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.3e-134 483.4 297 78.1
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.3e-134 483.4 300 75.7
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 1.6e-134 483.0 290 79.3
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-134 483.0 292 78.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.6e-134 483.0 298 76.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 2.8e-134 482.3 299 77.6
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 2.8e-134 482.3 300 76.3
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.3e-134 481.1 297 78.1
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 8.2e-134 480.7 300 76.0
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.4e-133 479.9 301 77.1
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.4e-133 479.2 299 77.3
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 3.1e-133 478.8 297 77.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.1e-133 478.8 289 81.3
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 4.1e-133 478.4 292 78.1
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 4.1e-133 478.4 292 78.1
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 4.1e-133 478.4 295 77.3
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 9.1e-133 477.2 295 76.3
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.2e-132 476.9 296 76.4
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.2e-132 476.9 288 78.1
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.5e-132 474.9 297 75.4
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 5.9e-132 474.6 297 76.1
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 5.9e-132 474.6 298 75.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.3e-131 473.4 260 84.6
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.9e-131 472.2 296 76.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 2.9e-131 472.2 298 75.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 6.5e-131 471.1 288 76.7
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.4e-130 469.9 298 75.2
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 3.2e-130 468.8 298 75.8
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.2e-130 468.4 281 79.4
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 5.5e-130 468.0 303 75.2
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 7.2e-130 467.6 284 78.5
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 7.2e-130 467.6 301 75.7
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 6.1e-129 464.5 288 76.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 6.1e-129 464.5 296 75.3
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 3.0e-128 462.2 285 76.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 5.1e-128 461.5 292 76.7
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.7e-128 461.1 292 77.4
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 8.8e-128 460.7 302 72.8
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.1e-127 460.3 292 75.3
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 3.3e-127 458.8 286 76.6
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 3.3e-127 458.8 398 59.8
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.3e-126 456.8 296 74.7
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.2e-126 456.1 294 74.5
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.1e-125 453.8 297 73.4
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.4e-125 452.6 303 74.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 3.1e-125 452.2 295 72.9
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 5.3e-125 451.4 296 71.6
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 6.9e-125 451.1 272 77.6
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 3.4e-124 448.7 285 75.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.4e-124 448.7 306 72.9
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 3.8e-123 445.3 300 70.3
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 3.2e-122 442.2 303 70.0
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 4.2e-122 441.8 304 71.1
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.2e-121 440.3 302 70.2
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.1e-121 439.5 310 69.7
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 6.1e-121 438.0 296 70.6
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.4e-120 436.8 301 71.8
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 2.3e-120 436.0 302 69.2
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 5.2e-120 434.9 310 70.6
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.4e-117 426.0 290 71.0
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.9e-114 416.4 301 68.8
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 4.2e-114 415.2 246 80.9
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 6.1e-113 411.4 314 65.3
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.4e-112 410.2 296 69.3
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 8.8e-112 407.5 299 69.2
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-112 407.5 299 69.2
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.3e-111 405.6 266 73.3
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 4.8e-110 401.7 213 90.1
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 8.2e-110 401.0 282 69.5
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 8.5e-107 391.0 248 74.6
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.6e-103 379.4 300 62.3
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.3e-99 367.1 263 65.4
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.7e-99 366.7 210 82.9
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 5.5e-98 361.7 286 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 8.0e-97 357.8 250 69.2
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.5e-92 342.4 202 79.7
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.0e-91 340.9 202 80.2
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 1.0e-91 340.9 243 71.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 2.9e-91 339.3 252 68.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 8.9e-72 274.6 215 65.6
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 5.8e-71 271.9 297 52.2
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 7.5e-71 271.6 270 55.6
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.4e-70 268.5 151 90.1
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 7.1e-69 265.0 269 48.7
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.5e-66 256.5 265 49.4
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.5e-55 220.7 177 61.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.4e-55 219.5 262 45.0
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 5.8e-55 218.8 129 81.4
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.3e-54 217.6 288 46.9
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.0e-40 169.5 97 81.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 1.4e-37 161.0 163 55.2
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.9e-34 150.6 99 74.7
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 2.4e-32 143.7 81 79.0
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 5.5e-29 132.5 66 84.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-27 127.1 109 57.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.1e-16 90.1 67 65.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.8e-14 83.2 56 69.6
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 3.6e-12 76.6 56 69.6
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.5e-07 61.2 39 76.9
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.0e-06 58.5 33 72.7


User provided reference genes

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