Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 2.6e-75 285.4 154 100.0
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 6.1e-69 264.2 152 90.8
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 6.1e-69 264.2 152 90.8
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 6.1e-69 264.2 152 90.8
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 9.1e-65 250.4 174 78.7
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.7e-63 246.1 182 75.3
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 1.8e-57 226.1 155 78.1
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.9e-54 216.1 154 74.0
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 4.3e-54 214.9 154 72.7
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 2.0e-48 196.1 146 70.5
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.5e-46 189.9 141 70.2
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 3.3e-46 188.7 151 69.5
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 2.1e-45 186.0 146 67.8
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.1e-45 186.0 146 68.5
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 3.6e-45 185.3 148 66.2
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 6.2e-45 184.5 147 66.7
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.1e-44 183.7 147 65.3
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 1.4e-44 183.3 143 67.8
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 3.1e-44 182.2 141 67.4
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 3.1e-44 182.2 148 64.9
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 6.8e-44 181.0 141 68.1
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 6.8e-44 181.0 148 64.2
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 8.9e-44 180.6 143 65.0
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 8.9e-44 180.6 131 71.8
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 1.2e-43 180.3 144 65.3
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 1.5e-43 179.9 139 66.9
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 2.6e-43 179.1 141 66.7
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 2.6e-43 179.1 141 66.7
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 3.4e-43 178.7 141 68.1
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 4.4e-43 178.3 139 69.1
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 5.8e-43 177.9 141 66.7
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 9.8e-43 177.2 126 72.2
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.3e-42 176.8 141 65.2
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.3e-42 176.8 141 66.0
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.3e-42 176.8 131 70.2
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.7e-42 176.4 141 67.4
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 4.9e-42 174.9 141 66.0
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 6.4e-42 174.5 141 65.2
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 8.3e-42 174.1 147 63.3
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 8.3e-42 174.1 141 68.8
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 1.4e-41 173.3 142 64.8
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 1.4e-41 173.3 147 65.3
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 1.9e-41 172.9 140 65.0
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.4e-41 172.6 141 66.7
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 3.2e-41 172.2 141 67.4
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 5.4e-41 171.4 141 61.7
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 9.2e-41 170.6 141 63.8
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 9.2e-41 170.6 123 71.5
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.2e-40 170.2 144 64.6
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 1.6e-40 169.9 143 63.6
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 2.7e-40 169.1 139 65.5
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.7e-40 169.1 141 61.0
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 3.5e-40 168.7 143 63.6
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 4.6e-40 168.3 125 71.2
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 4.6e-40 168.3 126 73.0
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 4.6e-40 168.3 141 62.4
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 7.8e-40 167.5 144 63.2
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 7.8e-40 167.5 141 61.0
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 1.0e-39 167.2 158 58.2
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 2.3e-39 166.0 145 62.8
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 3.9e-39 165.2 141 64.5
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 3.9e-39 165.2 146 61.6
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 6.6e-39 164.5 141 62.4
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 8.6e-39 164.1 126 68.3
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.1e-38 163.7 150 59.3
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 1.1e-38 163.7 141 62.4
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 1.5e-38 163.3 113 75.2
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 1.5e-38 163.3 141 63.1
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 1.9e-38 162.9 137 62.0
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.9e-38 162.9 147 59.9
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 3.3e-38 162.2 141 58.2
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 4.3e-38 161.8 141 61.0
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 4.3e-38 161.8 144 59.7
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 5.6e-38 161.4 147 59.9
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 9.5e-38 160.6 123 67.5
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.6e-37 159.8 131 63.4
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 2.1e-37 159.5 130 65.4
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.8e-37 159.1 132 62.9
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 3.6e-37 158.7 146 57.5
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 3.6e-37 158.7 147 59.9
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 4.7e-37 158.3 141 57.4
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 6.2e-37 157.9 112 71.4
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 1.4e-36 156.8 144 60.4
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 1.8e-36 156.4 144 60.4
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 1.8e-36 156.4 144 60.4
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 1.8e-36 156.4 138 60.9
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 2.3e-36 156.0 132 62.9
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.3e-36 156.0 153 56.2
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 3.1e-36 155.6 144 60.4
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 5.2e-36 154.8 130 62.3
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 6.8e-36 154.5 144 59.7
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 6.8e-36 154.5 138 62.3
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 8.9e-36 154.1 208 48.1
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 2.6e-35 152.5 134 59.7
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 3.4e-35 152.1 131 61.1
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 4.4e-35 151.8 119 64.7
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 5.8e-35 151.4 141 57.4
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 3.7e-34 148.7 134 60.4
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.1e-33 147.1 146 56.2
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 2.4e-33 146.0 131 60.3
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 2.4e-33 146.0 130 59.2
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 7.1e-33 144.4 139 54.0
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 7.1e-33 144.4 139 54.0
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 2.7e-32 142.5 123 57.7
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 3.0e-31 139.0 131 57.3
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 3.0e-31 139.0 127 58.3
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 5.1e-31 138.3 131 58.0
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 8.6e-31 137.5 140 54.3
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 3.1e-28 129.0 113 62.8
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 4.0e-28 128.6 151 47.7
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 6.8e-28 127.9 129 55.0
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 3.4e-27 125.6 135 50.4
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 6.4e-26 121.3 106 62.3
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 1.4e-25 120.2 304 32.9
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.2e-24 117.1 107 57.9
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 6.0e-24 114.8 117 58.1
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 2.0e-19 99.8 73 72.6
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 5.4e-17 91.7 111 45.0
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 2.3e-15 86.3 104 50.0
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 6.6e-15 84.7 76 56.6
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 3.1e-12 75.9 72 54.2
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 9.0e-12 74.3 125 37.6
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 9.0e-12 74.3 140 36.4
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 4.5e-11 72.0 114 41.2
MBI15_g37973_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.1e-09 67.4 65 56.9


User provided reference genes

Program Settings