Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 0.0e+00 1300.0 656 100.0
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.2e-226 788.1 671 66.6
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 4.4e-225 785.0 646 69.0
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.5e-214 748.8 629 68.7
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.4e-208 728.0 673 63.0
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 1.2e-113 414.8 646 44.0
FAN18G3895 Fragaria x ananassa HOM05D007047 ORTHO05D009177 9.2e-106 388.7 376 60.1
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 3.4e-100 370.2 658 40.6
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.9e-91 340.5 317 63.7
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 4.0e-77 293.5 560 40.2
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.9e-75 287.3 558 39.6
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.0e-68 264.6 339 52.5
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 1.8e-56 224.9 571 34.9
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 3.1e-53 214.2 201 62.2
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 4.2e-50 203.8 583 33.3
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 6.0e-49 199.9 548 33.4
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 1.0e-48 199.1 556 34.5
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 7.6e-44 183.0 464 35.6
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.0e-43 182.6 459 35.7
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 4.2e-42 177.2 535 32.7
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 4.2e-42 177.2 577 31.4
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 7.2e-42 176.4 441 33.8
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 7.2e-42 176.4 556 31.7
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 2.1e-41 174.9 425 36.2
FAN18G3996 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.3e-40 172.2 164 59.8
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 3.1e-37 161.0 557 31.1
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 3.4e-36 157.5 542 30.8
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 2.2e-35 154.8 462 31.4
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.2e-33 149.1 441 32.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.2e-33 149.1 553 29.1
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.5e-31 142.1 429 33.8
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 4.3e-31 140.6 432 32.6
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 4.3e-31 140.6 438 31.5
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 6.3e-30 136.7 337 33.8
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 8.2e-30 136.3 556 30.4
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 2.0e-28 131.7 445 31.9
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.4e-28 131.0 442 31.4
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.7e-27 128.6 461 30.4
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 5.0e-27 127.1 557 29.8
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 1.1e-26 125.9 436 30.0
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 2.5e-26 124.8 436 31.9
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 7.2e-26 123.2 432 30.1
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.6e-25 122.1 430 29.5
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.6e-25 122.1 430 29.5
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 7.9e-25 119.8 554 28.9
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 5.1e-24 117.1 464 30.4
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 5.1e-24 117.1 347 32.3
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 1.1e-23 115.9 457 30.2
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 9.7e-23 112.8 449 29.2
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.2e-22 111.7 337 31.5
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 3.7e-22 110.9 435 29.2
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 3.7e-22 110.9 442 30.5
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 8.2e-22 109.8 208 37.5
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.4e-21 108.2 540 28.9
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 4.1e-21 107.5 337 31.5
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 5.3e-21 107.1 568 25.2
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 9.1e-21 106.3 432 28.2
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.2e-20 105.9 551 27.8
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 1.6e-20 105.5 446 28.0
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.0e-20 105.1 444 27.9
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 4.5e-20 104.0 556 28.1
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 5.9e-20 103.6 444 28.6
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 5.9e-20 103.6 555 26.5
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 7.7e-20 103.2 458 29.0
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.3e-19 102.4 450 28.0
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.7e-19 102.1 426 27.2
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 3.8e-19 100.9 317 30.6
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 3.8e-19 100.9 448 28.6
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 5.0e-19 100.5 457 28.9
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.5e-18 99.0 539 27.1
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.5e-18 98.2 441 28.6
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.2e-18 97.4 440 28.6
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 4.2e-18 97.4 559 25.8
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 2.1e-17 95.1 450 29.3
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 2.1e-17 95.1 572 26.0
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 2.7e-17 94.7 441 27.9
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 8.0e-17 93.2 541 27.0
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 8.0e-17 93.2 457 28.4
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 6.7e-16 90.1 528 26.1
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 6.7e-16 90.1 435 26.0
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.6e-15 88.2 331 31.7
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 3.3e-15 87.8 465 27.7
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 9.7e-15 86.3 320 30.0
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.3e-14 85.9 127 42.5
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 2.8e-14 84.7 334 29.3
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 3.7e-14 84.3 465 27.7
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.7e-14 84.3 460 25.7
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 4.8e-14 84.0 430 26.3
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 2.4e-13 81.6 586 23.4
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.4e-13 81.6 326 27.3
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 3.1e-13 81.3 542 25.6
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.6e-12 79.0 110 42.7
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 2.0e-12 78.6 331 26.9
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 5.9e-12 77.0 544 25.2
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.3e-11 75.9 228 33.3
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 3.2e-10 71.2 360 27.5
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 1.4e-08 65.9 137 34.3
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 4.0e-08 64.3 151 33.8
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 1.3e-06 59.3 94 43.6
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 3.7e-06 57.8 49 53.1
RcHm_v2.0_Chr1g0325401 Rosa chinensis HOM05D007047 ORTHO05D009177 4.8e-06 57.4 35 82.9


User provided reference genes

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