Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 4.5e-225 784.6 520 100.0
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.8e-134 482.3 474 75.3
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 1.1e-133 481.1 474 77.0
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.5e-132 476.1 474 75.9
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 3.2e-130 469.5 473 72.7
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 1.1e-106 391.3 478 66.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.9e-101 374.0 473 61.9
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 6.0e-92 342.4 475 61.5
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 8.6e-83 312.0 474 51.3
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 4.3e-82 309.7 471 52.0
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 5.6e-82 309.3 474 54.9
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 1.6e-81 307.8 474 59.1
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 2.8e-81 307.0 475 51.6
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 3.6e-81 306.6 467 57.4
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 8.1e-81 305.4 472 51.7
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 6.8e-80 302.4 471 51.4
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 6.8e-80 302.4 470 49.8
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 6.8e-80 302.4 471 51.4
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 1.2e-79 301.6 471 56.7
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.0e-79 300.8 467 55.2
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.6e-79 300.4 470 51.5
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 9.9e-79 298.5 470 56.8
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 9.9e-79 298.5 470 56.8
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 9.9e-79 298.5 470 56.8
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 8.4e-78 295.4 471 57.7
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 1.4e-77 294.7 472 53.8
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.2e-76 291.6 470 55.7
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 4.6e-76 289.7 473 55.6
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 6.6e-75 285.8 443 60.3
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.3e-74 283.5 475 58.3
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 5.6e-74 282.7 472 56.8
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 5.6e-74 282.7 474 57.2
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.1e-73 280.8 466 59.4
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 3.6e-73 280.0 465 58.1
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 8.1e-73 278.9 460 52.6
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.8e-72 277.7 472 57.6
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 6.9e-72 275.8 470 55.3
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 9.0e-72 275.4 472 57.4
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.0e-71 274.2 470 56.6
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.2e-70 270.8 461 56.8
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 3.8e-70 270.0 452 47.8
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 4.9e-70 269.6 471 49.3
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 1.1e-69 268.5 470 54.5
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.9e-69 267.7 449 53.9
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 2.4e-69 267.3 467 47.1
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 3.2e-69 266.9 472 55.3
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 2.1e-68 264.2 420 39.0
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 6.0e-68 262.7 474 50.8
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.3e-67 260.8 468 53.4
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 3.0e-67 260.4 447 53.9
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.0e-67 260.4 473 50.1
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 5.1e-67 259.6 475 55.6
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 3.3e-66 256.9 475 56.8
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 4.3e-66 256.5 468 54.3
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 7.4e-66 255.8 471 55.4
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.4e-64 250.8 473 52.2
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 3.4e-63 246.9 450 49.8
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 5.8e-63 246.1 463 56.4
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 2.9e-62 243.8 475 53.9
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 3.2e-61 240.4 443 52.6
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 7.1e-61 239.2 475 51.8
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 1.0e-59 235.3 478 49.8
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.3e-59 234.2 444 52.0
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 3.9e-59 233.4 445 54.6
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 5.6e-58 229.6 472 51.7
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 7.4e-58 229.2 462 47.6
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 2.4e-56 224.2 518 43.6
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 2.9e-54 217.2 495 41.4
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 7.1e-53 212.6 425 36.7
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 3.0e-51 207.2 401 53.9
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 3.0e-51 207.2 456 51.1
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.5e-50 204.9 474 46.2
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 7.4e-50 202.6 444 53.2
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 9.6e-50 202.2 474 44.5
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 6.3e-49 199.5 474 49.6
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.1e-48 198.7 470 46.8
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.8e-48 198.0 472 50.0
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.4e-48 197.6 379 55.9
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 4.1e-48 196.8 472 48.5
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 6.9e-48 196.1 474 45.1
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.2e-47 195.3 457 53.0
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 2.2e-46 191.0 468 41.5
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 6.5e-46 189.5 446 50.7
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.5e-45 187.6 106 87.7
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.5e-45 186.4 430 53.5
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 3.6e-44 183.7 397 47.4
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 3.6e-44 183.7 381 56.7
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 7.9e-44 182.6 482 49.8
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.1e-42 178.7 167 55.1
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.7e-42 176.4 353 58.9
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 8.2e-41 172.6 184 48.4
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-40 172.2 351 59.0
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.8e-40 171.4 141 59.6
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 4.1e-40 170.2 164 52.4
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 3.4e-39 167.2 420 51.7
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 5.9e-39 166.4 346 59.5
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.4e-37 159.1 159 51.6
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 7.9e-36 156.0 425 44.0
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.0e-35 155.6 336 53.3
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.8e-35 154.8 144 56.9
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 5.7e-34 149.8 174 44.8
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 5.7e-34 149.8 421 48.9
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 9.7e-34 149.1 331 61.9
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 3.4e-31 140.6 128 53.1
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.9e-31 139.8 124 52.4
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 2.5e-29 134.4 356 54.5
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.6e-28 131.7 149 45.0
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.6e-28 131.7 376 50.0
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 2.1e-28 131.3 307 56.0
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 6.1e-28 129.8 166 41.6
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 6.7e-27 126.3 129 46.5
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 5.7e-26 123.2 144 41.7
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 5.9e-23 113.2 171 37.4
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 9.4e-21 105.9 507 34.9
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 1.2e-20 105.5 116 50.9
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.6e-20 105.1 55 90.9
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 1.2e-18 99.0 128 38.3
AUR62007125 Chenopodium quinoa HOM05D000093 ORTHO05D007866 5.3e-16 90.1 237 68.8
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 2.0e-15 88.2 89 49.4
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 1.3e-14 85.5 410 22.2
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 4.2e-13 80.5 235 50.6
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 4.2e-13 80.5 76 50.0
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 3.0e-11 74.3 135 31.9
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 1.2e-10 72.4 113 36.3
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 2.0e-10 71.6 127 33.9
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 2.2e-09 68.2 183 25.7
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 2.2e-09 68.2 183 25.7
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 4.8e-09 67.0 183 25.7
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 6.3e-09 66.6 64 48.4
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.3e-09 66.6 182 26.9
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.1e-08 65.9 155 26.5
Rhsim08G0086500 Rhododendron simsii HOM05D002007 ORTHO05D000355 1.4e-08 65.5 430 19.8
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 1.8e-08 65.1 141 27.0
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 3.1e-08 64.3 141 28.4
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 3.1e-08 64.3 141 28.4
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 9.1e-08 62.8 160 26.9
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 9.1e-08 62.8 424 20.5
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.6e-07 62.0 160 26.9
Eucgr.J01548 Eucalyptus grandis HOM05D002007 ORTHO05D000355 1.6e-07 62.0 175 27.4
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 2.7e-07 61.2 138 23.2
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.7e-07 61.2 171 24.0
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 3.5e-07 60.8 163 25.8
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 4.5e-07 60.5 155 27.1
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 5.9e-07 60.1 426 19.7
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 5.9e-07 60.1 158 23.4
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 1.0e-06 59.3 155 23.2
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 1.3e-06 58.9 141 27.7
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 1.3e-06 58.9 141 25.5
SGA_v2.0_scaffold149G36498 Striga asiatica HOM05D002007 ORTHO05D000355 1.7e-06 58.5 175 26.3
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 2.2e-06 58.2 141 27.7
Prupe.1G186300 Prunus persica HOM05D007128 ORTHO05D009059 2.2e-06 58.2 173 25.4
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 2.2e-06 58.2 138 23.9
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 2.9e-06 57.8 138 27.5
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.9e-06 57.8 138 27.5
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 2.9e-06 57.8 151 25.8
Duzib133G0117 Durio zibethinus HOM05D002007 ORTHO05D000355 2.9e-06 57.8 173 27.2
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 3.8e-06 57.4 136 27.9
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.8e-06 57.4 139 22.3
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 3.8e-06 57.4 171 26.3
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 3.8e-06 57.4 138 26.8
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 5.0e-06 57.0 147 27.2
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 5.0e-06 57.0 139 27.3
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.5e-06 56.6 181 22.7
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 6.5e-06 56.6 193 23.3
Cpa.g.sc222.25 Carica papaya HOM05D006596 ORTHO05D008497 6.5e-06 56.6 131 24.4
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 6.5e-06 56.6 123 27.6
RcHm_v2.0_Chr4g0408411 Rosa chinensis HOM05D007128 ORTHO05D009059 6.5e-06 56.6 175 27.4
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 8.5e-06 56.2 146 29.5
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 8.5e-06 56.2 159 23.3


User provided reference genes

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