Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.5e-38 162.5 90 100.0
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-30 136.3 84 82.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 6.4e-26 120.6 83 81.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.3e-23 112.1 83 78.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.3e-23 112.1 83 78.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.3e-23 112.1 83 78.3
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 3.0e-23 111.7 83 67.5
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.3e-22 108.2 83 75.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.3e-22 108.2 83 75.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.3e-22 108.2 83 75.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.8e-18 94.7 83 56.6
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.8e-18 94.7 83 56.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.1e-17 93.2 82 57.3
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.4e-17 92.8 82 57.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-17 92.0 82 58.5
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 2.4e-17 92.0 82 54.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.2e-17 91.7 82 61.0
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 3.2e-17 91.7 83 59.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 3.2e-17 91.7 83 55.4
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.1e-17 90.5 108 48.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 9.2e-17 90.1 82 57.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.6e-16 89.4 82 54.9
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.6e-16 89.4 82 54.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.1e-16 89.0 82 53.7
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.5e-16 88.2 83 51.8
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.5e-16 88.2 82 56.1
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 6.0e-16 87.4 82 52.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.8e-16 87.0 82 52.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.8e-16 87.0 82 58.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 7.8e-16 87.0 82 54.9
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.8e-16 87.0 82 52.4
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.0e-15 86.7 82 54.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.0e-15 86.7 82 54.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.0e-15 86.7 82 51.2
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.0e-15 86.7 82 53.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.0e-15 86.7 82 54.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.0e-15 86.7 83 55.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.3e-15 86.3 82 53.7
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.3e-15 85.5 84 53.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 2.3e-15 85.5 88 50.0
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 2.3e-15 85.5 82 53.7
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.3e-15 85.5 82 53.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 3.9e-15 84.7 82 53.7
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.9e-15 84.7 84 56.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.1e-15 84.3 83 54.2
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 6.6e-15 84.0 83 54.2
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 6.6e-15 84.0 82 54.9
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.6e-15 84.0 82 51.2
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.1e-14 83.2 83 50.6
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.1e-14 83.2 83 53.0
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.5e-14 82.8 86 52.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-14 82.8 82 51.2
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.5e-14 82.8 82 53.7
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.9e-14 82.4 82 52.4
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.9e-14 82.4 82 51.2
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 2.5e-14 82.0 82 48.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-14 82.0 82 50.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.3e-14 81.6 83 51.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 4.3e-14 81.3 83 51.8
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 7.3e-14 80.5 85 51.8
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 9.6e-14 80.1 82 51.2
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.6e-14 80.1 82 51.2
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.2e-13 79.7 83 50.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.8e-13 78.6 82 50.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.6e-13 78.2 82 46.3
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 4.7e-13 77.8 85 50.6
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.7e-13 77.8 82 50.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 6.2e-13 77.4 87 51.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.2e-13 77.4 119 41.2
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 6.2e-13 77.4 82 53.7
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 8.1e-13 77.0 87 50.6
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 8.1e-13 77.0 83 53.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 8.1e-13 77.0 84 51.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 8.1e-13 77.0 53 69.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.1e-12 76.6 82 50.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.1e-12 76.6 82 50.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.1e-12 76.6 122 41.0
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.4e-12 76.3 84 52.4
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.8e-12 75.9 102 42.2
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.4e-12 75.5 83 50.6
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.4e-12 75.5 83 50.6
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 2.4e-12 75.5 83 50.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 3.1e-12 75.1 82 48.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.1e-12 75.1 82 50.0
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 4.0e-12 74.7 82 47.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.3e-12 74.3 83 51.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 9.0e-12 73.6 82 48.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.0e-12 73.6 82 50.0
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 9.0e-12 73.6 81 48.1
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.2e-11 73.2 82 45.1
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.5e-11 72.8 82 51.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.6e-11 72.0 82 47.6
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.6e-11 72.0 82 54.9
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.6e-11 72.0 82 52.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 3.4e-11 71.6 82 51.2
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 7.6e-11 70.5 82 47.6
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.2e-10 68.9 102 40.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 8.4e-10 67.0 79 44.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 8.4e-10 67.0 82 46.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 8.4e-10 67.0 82 46.3
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.4e-09 66.2 82 43.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.9e-09 65.9 80 45.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 7.1e-09 63.9 82 43.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.1e-09 63.9 34 82.4
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.3e-09 63.5 35 82.9
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 9.3e-09 63.5 36 80.6
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-07 59.3 30 86.7
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-07 59.3 30 86.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.7e-07 59.3 83 39.8
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-07 59.3 34 79.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 3.0e-07 58.5 35 71.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.0e-07 58.5 35 74.3
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.1e-07 57.8 83 39.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 8.7e-07 57.0 35 68.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 8.7e-07 57.0 35 65.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.5e-06 56.2 35 68.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.5e-06 56.2 35 68.6
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 3.3e-06 55.1 35 71.4
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 9.6e-06 53.5 35 65.7
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.6e-06 53.5 35 62.9


User provided reference genes

Program Settings