Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 6.3e-307 1056.6 530 100.0
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 7.1e-242 840.5 494 87.0
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.8e-240 835.9 494 86.6
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.0e-240 835.1 494 86.6
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.3e-239 831.6 494 86.2
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.4e-236 821.6 494 85.6
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.4e-226 789.6 494 83.8
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 2.6e-220 768.8 496 78.8
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 6.3e-206 721.1 495 75.4
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.5e-188 662.1 482 69.3
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.0e-187 660.6 481 71.5
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 4.9e-182 641.7 485 69.7
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.8e-181 639.8 497 66.4
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 3.1e-181 639.0 488 68.0
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.9e-179 632.5 505 63.0
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 3.8e-179 632.1 429 73.0
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 3.3e-178 629.0 483 66.7
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-176 623.6 498 62.7
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.8e-176 621.3 486 64.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.5e-175 620.2 490 66.1
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.0e-175 619.8 490 66.1
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.7e-174 615.5 489 65.2
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 4.9e-174 615.1 497 66.4
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 4.9e-174 615.1 503 65.2
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.2e-173 612.5 488 64.8
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 2.0e-172 609.8 494 63.8
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 3.5e-172 609.0 448 67.9
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 4.6e-172 608.6 454 67.8
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 3.0e-171 605.9 455 68.6
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 3.0e-171 605.9 502 62.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 9.5e-170 600.9 488 63.3
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.6e-169 600.1 489 62.0
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 2.3e-168 596.3 498 61.8
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.1e-168 595.9 520 61.9
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 5.2e-168 595.1 501 61.7
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.6e-167 592.8 486 63.2
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 5.8e-167 591.7 500 62.0
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.3e-166 590.5 498 62.0
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 2.2e-166 589.7 490 63.7
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 8.3e-166 587.8 502 60.4
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 8.3e-166 587.8 473 64.9
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.9e-165 586.6 498 60.6
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 4.1e-165 585.5 488 62.3
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 1.2e-164 583.9 486 61.3
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.0e-164 583.2 491 63.1
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.7e-164 582.8 500 61.2
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 4.6e-164 582.0 495 61.8
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 7.8e-164 581.3 427 66.7
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 1.3e-163 580.5 489 62.4
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.3e-163 579.7 490 61.6
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 2.3e-163 579.7 405 70.1
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.3e-163 579.7 500 61.4
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 2.3e-163 579.7 496 61.9
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 5.0e-163 578.6 478 62.3
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 6.6e-163 578.2 426 67.8
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.1e-162 577.4 489 62.2
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.1e-162 577.4 489 59.9
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.5e-162 577.0 524 58.6
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.5e-162 577.0 524 58.6
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 5.6e-162 575.1 498 60.8
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 5.6e-162 575.1 491 63.5
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 9.5e-162 574.3 474 62.2
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.2e-161 573.9 488 62.9
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 2.1e-161 573.2 499 60.1
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 8.1e-161 571.2 477 62.7
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 2.3e-160 569.7 499 59.9
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 3.1e-160 569.3 499 59.7
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 5.2e-160 568.5 501 58.5
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.6e-159 566.2 486 59.9
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.7e-158 563.5 485 59.8
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 2.2e-158 563.1 498 60.4
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.9e-158 562.8 498 59.6
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 3.7e-158 562.4 498 59.8
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 8.3e-158 561.2 492 60.8
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.3e-158 561.2 531 57.4
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 1.6e-156 557.0 448 62.1
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 3.9e-155 552.4 429 66.9
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 9.5e-154 547.7 495 60.0
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.5e-151 540.4 493 57.4
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.4e-149 533.9 500 57.2
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.9e-149 533.5 504 56.7
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 2.1e-148 530.0 524 55.5
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 1.1e-146 524.2 496 56.5
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.5e-146 523.9 497 55.7
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 5.6e-146 521.9 424 61.6
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 3.6e-145 519.2 406 64.3
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 1.1e-144 517.7 483 56.9
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.8e-144 516.9 474 58.2
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.3e-142 510.8 499 54.7
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-141 507.3 386 66.8
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 9.3e-141 504.6 438 59.4
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.6e-140 503.8 438 59.1
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.6e-140 503.8 511 54.4
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 3.0e-139 499.6 488 53.3
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.9e-139 499.2 489 54.6
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.1e-136 491.1 505 51.1
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.0e-135 486.9 484 55.8
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.4e-133 479.9 403 62.5
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.6e-132 477.2 403 63.0
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 2.7e-132 476.5 451 57.4
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.0e-131 474.6 452 57.1
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 2.3e-131 473.4 412 60.2
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 7.6e-127 458.4 348 67.5
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 5.5e-125 452.2 347 64.8
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 2.1e-124 450.3 348 65.5
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.4e-120 437.6 346 65.9
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 3.1e-120 436.4 349 63.0
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 3.9e-99 366.3 284 65.1
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 3.5e-87 326.6 467 41.1
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 2.5e-85 320.5 229 70.3
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 4.7e-84 316.2 401 47.1
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 4.8e-81 306.2 397 48.1
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.6e-76 291.2 470 39.1
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 6.1e-76 289.3 213 69.0
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.4e-75 288.1 303 54.1
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 3.1e-72 276.9 216 69.0
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 5.4e-72 276.2 424 41.0
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 4.4e-66 256.5 458 36.2
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 1.2e-55 221.9 186 59.1
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.4e-51 208.4 210 53.8
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.9e-48 198.0 457 30.2
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.5e-45 187.6 170 56.5
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 6.4e-41 172.9 166 54.8
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.6e-39 166.8 199 47.7
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 8.1e-36 156.0 240 37.5
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.4e-33 146.0 274 36.9
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.2e-31 142.1 336 32.7
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 7.3e-29 132.9 116 56.0
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.6e-28 130.6 117 55.6
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.7e-28 130.2 112 57.1
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.5e-23 114.0 110 52.7
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.6e-20 104.0 78 56.4
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 3.1e-19 100.9 75 72.0
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 7.9e-15 86.3 84 51.2
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 3.1e-11 74.3 44 72.7


User provided reference genes

Program Settings