Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.9e-136 489.2 246 100.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-132 476.1 246 96.7
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.1e-132 473.8 246 96.3
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.1e-132 473.8 246 96.3
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.1e-132 473.8 246 96.3
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-131 473.4 246 96.3
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.9e-131 470.7 245 95.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-130 469.9 246 95.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.1e-107 393.7 248 79.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.5e-106 389.8 247 79.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 6.7e-102 374.4 249 78.3
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 77.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 4.1e-99 365.2 246 76.4
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 5.3e-99 364.8 247 76.5
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.0e-98 362.8 248 75.4
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.4e-98 362.1 248 75.0
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.3e-97 360.1 249 75.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.0e-97 358.2 246 75.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.5e-97 357.5 247 74.9
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-96 356.3 247 74.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.9e-96 356.3 250 74.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.5e-96 354.8 247 74.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 9.4e-96 354.0 247 73.7
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-95 352.8 247 73.3
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.7e-95 351.7 247 71.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 6.1e-95 351.3 248 74.6
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.0e-94 350.5 252 72.6
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.0e-94 350.5 247 72.9
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.8e-94 349.7 247 72.9
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-94 349.4 247 71.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.0e-94 349.0 247 71.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.1e-94 348.2 253 70.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.0e-93 346.3 247 73.3
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.0e-93 346.3 250 73.2
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-93 346.3 245 72.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.0e-93 346.3 255 69.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.3e-93 345.5 247 72.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.4e-93 345.1 247 72.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 5.7e-93 344.7 247 72.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 9.7e-93 344.0 246 72.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 9.7e-93 344.0 247 72.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 72.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.2e-92 342.8 264 68.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 248 72.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.4e-91 339.3 247 70.9
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 4.1e-91 338.6 246 70.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.0e-91 337.8 249 71.9
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.0e-91 337.8 249 71.9
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 9.1e-91 337.4 247 70.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-90 336.3 250 70.8
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.9e-90 334.7 248 71.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.3e-89 333.6 248 71.0
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 2.2e-89 332.8 246 70.7
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.8e-89 332.0 250 67.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 8.5e-89 330.9 248 71.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.5e-89 330.9 250 69.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 70.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 245 70.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.5e-88 329.3 247 68.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.2e-88 328.9 248 70.6
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 7.2e-88 327.8 245 70.2
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 7.2e-88 327.8 253 69.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.6e-87 326.6 247 69.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-87 325.9 250 70.4
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.7e-87 325.9 251 67.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 4.7e-87 325.1 247 68.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.0e-86 322.4 217 74.2
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 3.0e-86 322.4 257 67.3
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.0e-86 322.0 252 68.3
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 5.2e-86 321.6 250 68.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 6.7e-86 321.2 248 67.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 8.8e-86 320.9 252 68.7
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.0e-85 319.7 248 67.3
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-84 316.6 248 69.0
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.7e-84 316.6 243 70.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.7e-84 316.6 313 56.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.8e-84 315.8 246 67.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.8e-84 315.1 236 70.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.3e-84 314.7 247 65.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.1e-83 313.9 245 66.5
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-83 313.5 248 67.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.3e-83 311.6 245 66.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.1e-83 310.8 243 67.1
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 65.6
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.1e-83 310.8 245 65.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 65.6
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 9.1e-83 310.8 241 66.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-82 310.5 232 72.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-82 310.1 236 67.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.6e-82 310.1 245 65.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.0e-82 309.7 246 65.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-82 309.3 246 65.0
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.5e-82 308.9 247 64.8
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.5e-82 308.9 247 65.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.5e-82 308.9 243 64.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.0e-81 307.4 249 66.3
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.0e-81 307.4 237 68.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-81 307.0 252 63.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.3e-81 307.0 247 64.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.7e-81 306.6 243 65.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.2e-81 306.2 244 66.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.8e-81 305.4 245 64.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 6.5e-81 304.7 256 65.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 6.5e-81 304.7 321 53.9
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.2e-80 301.2 248 63.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 7.2e-80 301.2 258 64.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 9.4e-80 300.8 251 65.7
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.7e-79 299.3 246 63.8
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.7e-79 299.3 244 66.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.7e-79 298.5 247 63.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 6.1e-79 298.1 237 68.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 2.3e-78 296.2 252 63.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 8.8e-78 294.3 244 64.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 8.8e-78 294.3 266 63.2
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.6e-77 292.7 259 64.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 4.4e-77 292.0 251 61.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.7e-76 290.0 238 65.5
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-76 289.7 256 64.1
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.8e-76 289.3 244 62.3
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.8e-76 289.3 200 71.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-75 287.0 214 68.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-75 285.8 246 61.8
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-75 285.8 246 61.8
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.1e-75 285.8 246 61.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.0e-74 283.1 216 66.7
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.7e-74 282.7 241 64.7
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.5e-74 282.0 246 61.4
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.0e-73 278.5 253 59.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.5e-73 278.1 251 59.8
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 6.5e-73 278.1 227 65.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.7e-71 272.7 249 57.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.9e-68 261.9 386 43.5
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.8e-67 260.0 249 55.8
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.7e-65 253.4 255 54.5
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 4.3e-64 248.8 248 58.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-64 248.4 232 56.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.2e-62 241.9 246 54.9
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.2e-62 241.9 237 56.5
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.6e-61 239.6 251 55.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.1e-59 234.2 147 74.8
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 7.8e-58 228.0 247 55.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.7e-57 226.9 148 73.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 8.9e-54 214.5 136 75.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-51 207.6 215 54.9
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-51 205.7 168 63.7
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-51 204.9 168 63.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.8e-45 185.3 194 54.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.2e-42 177.6 121 71.9
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-42 177.6 269 41.3
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 6.0e-42 175.3 117 73.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 7.8e-42 174.9 287 41.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 6.4e-36 155.2 133 67.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.7e-33 147.1 128 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.8e-31 139.8 292 36.0
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.7e-28 130.6 276 34.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.9e-28 129.8 94 73.4
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.2e-23 112.1 95 58.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.1e-23 111.7 96 60.4
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.4e-22 110.9 91 56.0
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 6.9e-22 108.6 79 65.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-19 100.9 74 71.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 6.0e-18 95.5 74 67.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.5e-16 90.1 121 53.7
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 9.6e-16 88.2 112 37.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.0e-14 82.8 135 38.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.6e-13 78.6 78 53.8
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.5e-11 72.4 133 43.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.1e-11 72.0 98 49.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 8.7e-09 65.1 155 34.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-08 63.5 81 45.7
Cfa020859 Carpinus fangiana HOM05D021855 ORTHO05D004837 9.0e-06 55.1 68 50.0


User provided reference genes

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