Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0203121 Rosa chinensis HOM05D000040 ORTHO05D007887 2.8e-77 292.0 155 100.0
FvH4_5g18770 Fragaria vesca HOM05D000040 ORTHO05D007887 2.0e-59 232.6 129 88.4
FAN18G0415 Fragaria x ananassa HOM05D000040 ORTHO05D007887 2.0e-59 232.6 129 88.4
FAN08G0174 Fragaria x ananassa HOM05D000040 ORTHO05D007887 1.7e-58 229.6 129 89.1
FAN13G2638 Fragaria x ananassa HOM05D000040 ORTHO05D007887 4.9e-58 228.0 129 88.4
FAN04G1609 Fragaria x ananassa HOM05D000040 ORTHO05D007887 7.1e-57 224.2 129 87.6
MD06G1060000 Malus domestica HOM05D000040 ORTHO05D007887 6.9e-44 181.0 125 77.6
Cfa012710 Carpinus fangiana HOM05D000040 ORTHO05D007887 3.4e-43 178.7 125 72.8
CiPaw.11G153600 Carya illinoinensis HOM05D000040 ORTHO05D007887 5.8e-43 177.9 124 75.0
Prupe.5G070800 Prunus persica HOM05D000040 ORTHO05D007887 9.9e-43 177.2 125 72.8
CANSAT21G2595 Cannabis sativa HOM05D000040 ORTHO05D007887 1.7e-42 176.4 131 69.5
TPR.G25916 Trifolium pratense HOM05D000040 ORTHO05D007887 1.4e-41 173.3 120 71.7
Medtr5g012490 Medicago truncatula HOM05D000040 ORTHO05D007887 7.8e-40 167.5 123 70.7
Lalb_Chr16g0379601 Lupinus albus HOM05D000040 ORTHO05D007887 2.3e-39 166.0 119 73.1
Haze_07924 Corylus avellana HOM05D000040 ORTHO05D007887 3.9e-39 165.2 106 77.4
CiPaw.12G109500 Carya illinoinensis HOM05D000040 ORTHO05D007887 6.6e-39 164.5 125 68.0
Psat0s1985g0160 Pisum sativum HOM05D000040 ORTHO05D007887 8.7e-39 164.1 127 70.9
QL12p012306 Quercus lobata HOM05D000040 ORTHO05D007887 1.9e-38 162.9 128 68.0
Potri.001G158600 Populus trichocarpa HOM05D000040 ORTHO05D007887 9.6e-38 160.6 127 67.7
Sabra01G0133200 Salix brachista HOM05D000040 ORTHO05D007887 1.4e-36 156.8 141 63.1
Sabra03G0046800 Salix brachista HOM05D000040 ORTHO05D007887 1.4e-36 156.8 131 64.9
Manes.02G039000 Manihot esculenta HOM05D000040 ORTHO05D007887 4.0e-36 155.2 128 64.1
Potri.003G076300 Populus trichocarpa HOM05D000040 ORTHO05D007887 4.0e-36 155.2 135 65.2
Hma1.2p1_3809F.1_g337631 Hydrangea macrophylla HOM05D000040 ORTHO05D007887 5.3e-36 154.8 119 68.1
Phvul.002G062600 Phaseolus vulgaris HOM05D000040 ORTHO05D007887 6.9e-36 154.5 120 65.0
TWI81G0206 Tripterygium wilfordii HOM05D000040 ORTHO05D007887 1.2e-35 153.7 128 66.4
PGR031G3448 Punica granatum HOM05D000040 ORTHO05D007887 2.0e-35 152.9 126 64.3
CSS0040248 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D007887 2.6e-35 152.5 120 68.3
Lj2g0017107 Lotus japonicus HOM05D000040 ORTHO05D007887 4.5e-35 151.8 123 62.6
Lalb_Chr05g0214501 Lupinus albus HOM05D000040 ORTHO05D007887 5.8e-35 151.4 123 67.5
VMungo1215G1928 Vigna mungo HOM05D000040 ORTHO05D007887 5.8e-35 151.4 120 64.2
Actinidia14434 Actinidia chinensis HOM05D000040 ORTHO05D007887 9.9e-35 150.6 120 65.8
Manes.01G080100 Manihot esculenta HOM05D000040 ORTHO05D007887 2.9e-34 149.1 111 70.3
Thecc.03G252400 Theobroma cacao HOM05D000040 ORTHO05D007887 6.4e-34 147.9 129 62.8
Gorai.003G171000 Gossypium raimondii HOM05D000040 ORTHO05D007887 8.4e-34 147.5 117 66.7
Psat4g071800 Pisum sativum HOM05D000040 ORTHO05D007887 1.1e-33 147.1 131 63.4
Gohir.D03G162400 Gossypium hirsutum HOM05D000040 ORTHO05D007887 3.2e-33 145.6 100 73.0
MELO3C013943.2 Cucumis melo HOM05D000040 ORTHO05D007887 4.2e-33 145.2 126 64.3
Nn6g33972 Nelumbo nucifera HOM05D000040 ORTHO05D007887 4.2e-33 145.2 112 67.9
CsaV3_3G002750 Cucumis sativus L. HOM05D000040 ORTHO05D007887 5.4e-33 144.8 126 64.3
VMungo0251G0874 Vigna mungo HOM05D000040 ORTHO05D007887 5.4e-33 144.8 123 64.2
Phvul.003G220100 Phaseolus vulgaris HOM05D000040 ORTHO05D007887 9.3e-33 144.1 125 62.4
ClCG10G002720 Citrullus lanatus HOM05D000040 ORTHO05D007887 2.1e-32 142.9 131 65.6
Sopen08g027150 Solanum pennellii HOM05D000040 ORTHO05D007887 2.7e-32 142.5 128 62.5
Oeu017025.1 Olea europaea HOM05D000040 ORTHO05D007887 4.6e-32 141.7 126 65.1
Atru.chr9.1323 Acer truncatum HOM05D000040 ORTHO05D007887 6.0e-32 141.4 108 66.7
Cpa.g.sc29.148 Carica papaya HOM05D000040 ORTHO05D007887 1.0e-31 140.6 131 60.3
Glyma.17G141200 Glycine max HOM05D000040 ORTHO05D007887 1.0e-31 140.6 127 60.6
Solyc08g078670.2 Solanum lycopersicum HOM05D000040 ORTHO05D007887 1.8e-31 139.8 128 60.9
Medtr4g100990 Medicago truncatula HOM05D000040 ORTHO05D007887 2.3e-31 139.4 126 65.1
Gohir.A08G170800 Gossypium hirsutum HOM05D000040 ORTHO05D007887 3.9e-31 138.7 112 66.1
Glyma.11G032200 Glycine max HOM05D000040 ORTHO05D007887 5.1e-31 138.3 118 61.9
PGR042G3631 Punica granatum HOM05D000040 ORTHO05D007887 6.7e-31 137.9 132 60.6
Gohir.A03G008500 Gossypium hirsutum HOM05D000040 ORTHO05D007887 8.7e-31 137.5 117 64.1
Eucgr.D02074 Eucalyptus grandis HOM05D000040 ORTHO05D007887 1.1e-30 137.1 115 67.8
PGSC0003DMG400004810 Solanum tuberosum HOM05D000040 ORTHO05D007887 1.1e-30 137.1 127 61.4
Duzib084G1312 Durio zibethinus HOM05D000040 ORTHO05D007887 1.5e-30 136.7 112 64.3
Nn1g01017 Nelumbo nucifera HOM05D000040 ORTHO05D007887 1.5e-30 136.7 123 60.2
Gohir.D08G189000 Gossypium hirsutum HOM05D000040 ORTHO05D007887 3.3e-30 135.6 112 65.2
Gorai.004G199100 Gossypium raimondii HOM05D000040 ORTHO05D007887 5.6e-30 134.8 112 65.2
VMungo0813G0001 Vigna mungo HOM05D000040 ORTHO05D007887 9.6e-30 134.0 100 69.0
Migut.A00985 Erythranthe guttata HOM05D000040 ORTHO05D007887 1.3e-29 133.7 124 59.7
CAN.G1367.5 Capsicum annuum HOM05D000040 ORTHO05D007887 1.6e-29 133.3 128 59.4
Cc08_g12510 Coffea canephora HOM05D000040 ORTHO05D007887 2.1e-29 132.9 124 62.1
AUR62007511 Chenopodium quinoa HOM05D000040 ORTHO05D007887 3.7e-29 132.1 129 58.1
PSO339G6016 Papaver somniferum HOM05D000040 ORTHO05D007887 6.2e-29 131.3 126 57.1
PSO384G3322 Papaver somniferum HOM05D000040 ORTHO05D007887 1.1e-28 130.6 127 56.7
Ciclev10019904m.g Citrus clementina HOM05D000040 ORTHO05D007887 1.8e-28 129.8 115 60.9
Hma1.2p1_2238F.1_g317770 Hydrangea macrophylla HOM05D000040 ORTHO05D007887 3.1e-28 129.0 105 63.8
GSVIVG01001318001 Vitis vinifera HOM05D000394 ORTHO05D007887 2.6e-27 125.9 89 71.9
Duzib205G0065 Durio zibethinus HOM05D000040 ORTHO05D007887 5.8e-27 124.8 136 55.1
unitig_61.g26187 Utricularia gibba HOM05D000040 ORTHO05D007887 1.0e-26 124.0 99 63.6
TPR.G37657 Trifolium pratense HOM05D000040 ORTHO05D007887 3.8e-26 122.1 132 57.6
MSTRG.12096 Avicennia marina HOM05D000040 ORTHO05D007887 4.9e-26 121.7 123 58.5
Lsat_1_v5_gn_3_980 Lactuca sativa HOM05D000040 ORTHO05D007887 6.5e-26 121.3 134 53.7
Sc01g0008480 Simmondsia chinensis HOM05D000040 ORTHO05D007887 1.1e-25 120.6 122 55.7
Aqoxy7G00757 Aquilegia oxysepala HOM05D000040 ORTHO05D007887 5.5e-25 118.2 111 59.5
CDE04G0330 Ceratophyllum demersum HOM05D000040 ORTHO05D007887 7.1e-25 117.9 101 60.4
A01p20840 Brassica napus HOM05D000040 ORTHO05D007887 6.0e-24 114.8 111 55.9
BraA01t02002Z Brassica rapa HOM05D000040 ORTHO05D007887 6.0e-24 114.8 111 55.9
Sp7g15170 Schrenkiella parvula HOM05D000040 ORTHO05D007887 1.0e-23 114.0 118 55.1
BcaC09g50372 Brassica carinata HOM05D000040 ORTHO05D007887 1.1e-22 110.5 125 51.2
vmacro19587 Vaccinium macrocarpon HOM05D000040 ORTHO05D007887 9.6e-22 107.5 144 47.2
THA.LOC104815491 Tarenaya hassleriana HOM05D000040 ORTHO05D007887 3.7e-21 105.5 119 52.9
Sed0003727 Sechium edule HOM05D000040 ORTHO05D007887 3.1e-20 102.4 129 50.4
CARHR223040 Cardamine hirsuta HOM05D000040 ORTHO05D007887 3.4e-19 99.0 124 49.2
SalBow6G4898 Salvia bowleyana HOM05D000040 ORTHO05D007887 5.8e-19 98.2 80 65.0
QL12p012322 Quercus lobata HOM05D000040 ORTHO05D007887 7.6e-19 97.8 135 45.2
Os04g0535200 Oryza sativa ssp. japonica HOM05D000040 ORTHO05D007887 2.9e-18 95.9 145 45.5
Peaxi162Scf00002g02218 Petunia axillaris HOM05D000040 ORTHO05D007887 5.0e-18 95.1 98 58.2
AUR62042787 Chenopodium quinoa HOM05D000040 ORTHO05D007887 1.4e-17 93.6 123 48.8
AUR62044147 Chenopodium quinoa HOM05D000040 ORTHO05D007887 1.4e-17 93.6 123 48.8
ATR0665G419 Amborella trichopoda HOM05D000040 ORTHO05D007887 9.3e-17 90.9 131 48.1
HanXRQChr17g0549681 Helianthus annuus HOM05D000040 ORTHO05D007887 1.2e-16 90.5 128 43.8
C01p26170 Brassica napus HOM05D000040 ORTHO05D007887 1.6e-16 90.1 125 45.6
BolC1t02560H Brassica oleracea HOM05D000040 ORTHO05D007887 1.6e-16 90.1 125 45.6
Carub.0007s2486 Capsella rubella HOM05D000040 ORTHO05D007887 4.6e-16 88.6 115 46.1
Zm00001eb075540 Zea mays HOM05D000040 ORTHO05D007887 6.1e-16 88.2 125 46.4
BcaNung00172 Brassica carinata HOM05D000040 ORTHO05D007887 2.3e-15 86.3 117 45.3
AL7G38270 Arabidopsis lyrata HOM05D000040 ORTHO05D007887 8.7e-15 84.3 115 47.0
AT4G16563 Arabidopsis thaliana HOM05D000040 ORTHO05D007887 5.7e-14 81.6 105 46.7
Lj4g0004582 Lotus japonicus HOM05D000040 ORTHO05D007887 2.4e-12 76.3 82 54.9
SEGI_25430 Sequoiadendron giganteum HOM05D000040 ORTHO05D007887 4.1e-12 75.5 98 45.9
SEGI_39825 Sequoiadendron giganteum HOM05D000040 ORTHO05D007887 5.3e-12 75.1 89 48.3
SEGI_13334 Sequoiadendron giganteum HOM05D000040 ORTHO05D007887 2.5e-09 66.2 91 42.9
Aa31LG2G12680 Aethionema arabicum HOM05D000040 ORTHO05D007887 1.6e-08 63.5 117 36.8
Glyma.05G058900 Glycine max HOM05D000040 ORTHO05D007887 2.7e-08 62.8 29 86.2
GSVIVG01033935001 Vitis vinifera HOM05D000040 ORTHO05D003752 4.6e-08 62.0 145 36.6
Thhalv10024791m.g Eutrema salsugineum HOM05D000040 ORTHO05D007887 1.4e-07 60.5 119 37.8
Psat3g030000 Pisum sativum HOM05D000040 ORTHO05D003752 1.4e-07 60.5 142 35.9
FAN05G2552 Fragaria x ananassa HOM05D000040 ORTHO05D003752 1.8e-07 60.1 140 37.9
FAN05G2984 Fragaria x ananassa HOM05D000040 ORTHO05D003752 1.8e-07 60.1 140 37.9
ECA246G3144 Erigeron canadensis HOM05D000040 ORTHO05D007887 2.3e-07 59.7 105 39.0
RcHm_v2.0_Chr3g0475521 Rosa chinensis HOM05D000040 ORTHO05D003752 2.3e-07 59.7 123 38.2
Dinv21634 Davidia involucrata HOM05D000040 ORTHO05D007887 3.0e-07 59.3 27 88.9
Ca_28019_v3 Cicer arietinum L. HOM05D000040 ORTHO05D007887 3.9e-07 58.9 36 75.0
MSTRG.19316 Avicennia marina HOM05D000040 ORTHO05D003752 6.7e-07 58.2 115 40.9
Hma1.2p1_0064F.1_g034746 Hydrangea macrophylla HOM05D000040 ORTHO05D003752 8.8e-07 57.8 144 34.0
Phvul.007G269300 Phaseolus vulgaris HOM05D000040 ORTHO05D003752 8.8e-07 57.8 137 37.2
TAR375G0003 Trochodendron aralioides HOM05D000040 ORTHO05D007887 1.1e-06 57.4 38 71.1
Ah.12g056860 Amaranthus hybridus HOM05D000040 ORTHO05D007887 1.5e-06 57.0 23 95.7
Sabra08G0087800 Salix brachista HOM05D000040 ORTHO05D009156 1.5e-06 57.0 122 38.5
Aqoxy4G02669 Aquilegia oxysepala HOM05D000040 ORTHO05D003752 2.5e-06 56.2 131 38.2
Cc11_g10660 Coffea canephora HOM05D000040 ORTHO05D009156 2.5e-06 56.2 106 39.6
Duzib128G0561 Durio zibethinus HOM05D000040 ORTHO05D003752 2.5e-06 56.2 115 40.9
FvH4_6g20050 Fragaria vesca HOM05D000040 ORTHO05D003752 2.5e-06 56.2 140 37.1
FAN14G1101 Fragaria x ananassa HOM05D000040 ORTHO05D003752 2.5e-06 56.2 140 37.1
Lj1g0007775 Lotus japonicus HOM05D000040 ORTHO05D003752 3.3e-06 55.8 141 38.3
ATR0772G014 Amborella trichopoda HOM05D000040 ORTHO05D003752 5.7e-06 55.1 108 36.1
Glyma.19G198500 Glycine max HOM05D000040 ORTHO05D003752 5.7e-06 55.1 147 34.7
PSO017G5323 Papaver somniferum HOM05D000040 ORTHO05D003752 5.7e-06 55.1 132 34.1
FAN02G3891 Fragaria x ananassa HOM05D000040 ORTHO05D003752 9.7e-06 54.3 140 36.4
TAR633G1638 Trochodendron aralioides HOM05D000040 ORTHO05D003752 9.7e-06 54.3 140 36.4


User provided reference genes

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