Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 3.4e-150 535.0 280 100.0
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 3.3e-129 465.3 282 86.2
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.3e-129 465.3 282 84.0
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 9.6e-129 463.8 283 84.5
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.3e-125 453.4 280 85.0
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 5.1e-114 414.8 281 80.8
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 4.2e-92 342.0 286 66.1
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 1.3e-88 330.5 286 61.9
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 1.7e-88 330.1 298 65.4
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 4.1e-87 325.5 273 60.8
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 1.7e-80 303.5 273 59.0
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 2.2e-80 303.1 273 59.0
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 3.7e-80 302.4 267 60.3
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 1.4e-79 300.4 273 58.6
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 3.5e-78 295.8 288 56.6
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 2.9e-77 292.7 257 58.4
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 1.2e-75 287.3 259 56.4
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 2.1e-75 286.6 292 54.5
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 6.7e-74 281.6 268 56.7
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 6.7e-74 281.6 281 54.8
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 1.5e-73 280.4 277 55.6
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 2.0e-73 280.0 272 52.9
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 5.7e-73 278.5 275 52.7
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 5.3e-71 271.9 274 55.5
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 4.5e-70 268.9 259 54.1
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 4.5e-70 268.9 275 54.2
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.7e-69 266.9 221 62.9
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 1.7e-69 266.9 272 52.9
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.1e-68 264.2 228 62.3
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 1.5e-68 263.8 227 60.4
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 5.5e-68 261.9 263 54.4
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 5.5e-68 261.9 263 54.4
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 7.2e-68 261.5 272 52.6
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 1.6e-67 260.4 263 54.0
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.6e-67 260.4 213 62.9
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 2.1e-67 260.0 272 51.1
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 4.7e-67 258.8 257 53.7
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 4.7e-67 258.8 297 50.8
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.8e-66 256.9 271 50.9
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 5.2e-66 255.4 315 47.6
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 1.5e-65 253.8 219 58.4
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 2.0e-65 253.4 257 57.6
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 4.4e-65 252.3 278 52.2
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 4.4e-65 252.3 278 52.2
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 6.3e-64 248.4 269 49.8
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 7.0e-63 245.0 226 58.4
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 7.7e-62 241.5 267 49.4
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 7.7e-62 241.5 267 49.4
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 7.7e-62 241.5 267 49.4
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 1.7e-61 240.4 274 47.4
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 2.9e-61 239.6 266 50.0
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 3.8e-61 239.2 258 51.9
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 3.8e-61 239.2 265 50.6
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 6.5e-61 238.4 267 49.8
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 6.5e-61 238.4 287 46.3
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 1.1e-60 237.7 262 50.0
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 2.5e-60 236.5 265 49.4
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 4.2e-60 235.7 267 49.1
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 4.2e-60 235.7 258 48.1
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 5.5e-60 235.3 286 46.9
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 5.5e-60 235.3 267 49.8
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 7.2e-60 235.0 267 49.4
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 1.2e-59 234.2 265 50.9
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 2.7e-59 233.0 269 48.7
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 8.0e-59 231.5 213 53.5
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 5.2e-58 228.8 267 47.2
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 2.6e-57 226.5 288 46.9
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 7.5e-57 224.9 262 48.9
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 9.8e-57 224.6 258 47.7
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 6.3e-56 221.9 285 47.7
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 9.1e-55 218.0 257 51.4
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 4.5e-54 215.7 262 50.0
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 2.3e-53 213.4 224 49.1
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 7.2e-52 208.4 267 47.9
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 9.5e-52 208.0 240 46.7
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 1.2e-49 201.1 251 45.8
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 4.1e-47 192.6 241 46.5
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.8e-43 179.9 282 40.8
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.0e-38 163.7 269 41.3
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 6.0e-38 162.2 242 44.6
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 1.2e-35 154.5 255 38.4
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 5.8e-33 145.6 257 37.0
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 2.3e-29 133.7 119 59.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.4e-26 124.4 125 50.4
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.7e-24 117.5 124 55.6
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 6.0e-22 109.0 243 34.6
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 5.6e-20 102.4 259 29.7
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 4.7e-19 99.4 251 29.1
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 8.1e-19 98.6 257 30.7
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 8.1e-19 98.6 256 30.5
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 1.4e-18 97.8 119 49.6
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 1.8e-18 97.4 270 30.0
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 1.8e-18 97.4 245 30.6
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 1.8e-18 97.4 245 30.6
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 8.9e-18 95.1 272 29.4
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 1.2e-17 94.7 247 30.0
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 1.5e-17 94.4 247 29.6
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 2.6e-17 93.6 253 31.6
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 2.6e-17 93.6 247 29.6
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 4.4e-17 92.8 247 29.6
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 5.8e-17 92.4 247 28.7
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 5.8e-17 92.4 255 29.0
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 1.3e-16 91.3 247 29.6
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 1.7e-16 90.9 255 30.2
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 2.2e-16 90.5 255 29.8
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 5.4e-15 85.9 256 28.9
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 2.1e-14 84.0 50 72.0
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 2.1e-14 84.0 257 28.8
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 2.1e-14 84.0 111 46.8
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 6.6e-13 79.0 76 53.9
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 6.6e-13 79.0 69 58.0
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 8.7e-13 78.6 68 55.9
TPR.G18947 Trifolium pratense HOM05D006860 ORTHO05D009547 1.1e-12 78.2 76 53.9
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 7.3e-12 75.5 62 58.1
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 9.0e-10 68.6 58 55.2
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 2.2e-08 63.9 240 22.9
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 2.9e-08 63.5 60 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 4.2e-07 59.7 240 23.3
Zm00001eb319230 Zea mays HOM05D006860 ORTHO05D009547 7.9e-06 55.5 60 46.7


User provided reference genes

Program Settings