Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 2.4e-218 761.9 390 100.0
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 3.2e-207 724.9 393 95.7
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.1e-206 722.2 393 95.4
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.6e-206 721.1 393 95.2
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.1e-205 717.6 398 94.5
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-204 716.5 393 94.7
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 9.4e-199 696.8 390 91.3
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 3.7e-195 684.9 391 89.0
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 5.5e-183 644.4 399 82.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.7e-182 642.1 392 84.2
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.4e-178 629.0 396 81.1
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 4.1e-178 628.2 408 80.1
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.0e-177 625.9 396 82.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 3.5e-177 625.2 395 81.5
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.9e-177 624.4 396 80.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 5.9e-177 624.4 401 80.5
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.5e-175 619.8 396 79.8
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.9e-175 619.4 402 80.3
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.9e-175 619.4 397 80.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.9e-175 619.4 400 80.0
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 2.5e-175 619.0 398 78.9
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 5.5e-175 617.8 402 78.9
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.4e-175 617.1 396 79.3
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.4e-175 617.1 396 79.5
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.6e-174 616.3 397 80.9
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 8.0e-174 614.0 399 79.9
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.0e-173 613.6 400 79.2
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.0e-173 611.7 399 80.5
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.8e-173 610.9 398 78.4
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.8e-173 610.9 398 78.4
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.0e-172 609.4 397 78.1
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 2.0e-172 609.4 395 76.7
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 3.4e-172 608.6 399 77.2
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 4.4e-172 608.2 406 78.3
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 9.7e-172 607.1 402 78.6
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.3e-171 606.7 397 79.3
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.8e-170 602.8 397 79.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.4e-170 602.4 390 77.9
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 3.1e-170 602.1 406 77.3
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.0e-169 599.4 397 77.1
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.3e-168 596.7 386 79.3
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 8.5e-168 594.0 399 76.7
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.5e-167 593.2 398 76.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.9e-167 592.8 396 76.0
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.9e-167 592.8 394 76.4
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 4.2e-167 591.7 398 76.1
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 7.2e-167 590.9 398 76.1
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 9.4e-167 590.5 399 76.4
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.1e-166 589.3 391 77.0
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.1e-166 589.3 358 82.1
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 4.7e-166 588.2 392 78.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 6.1e-166 587.8 397 75.6
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.4e-165 586.6 399 75.9
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.4e-165 586.6 393 76.8
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.4e-165 586.6 397 74.8
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.2e-165 584.7 395 76.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.5e-164 583.2 397 73.8
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 2.6e-164 582.4 398 76.1
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 4.4e-164 581.6 504 63.7
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 9.8e-164 580.5 390 75.6
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.3e-163 580.1 401 75.6
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.1e-162 577.0 398 74.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 3.1e-162 575.5 395 74.2
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 3.1e-162 575.5 405 74.1
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 7.0e-162 574.3 391 75.4
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 2.7e-161 572.4 359 80.2
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 3.5e-161 572.0 419 71.4
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.9e-161 571.2 385 75.8
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.3e-160 569.3 407 73.5
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 3.8e-160 568.5 408 72.8
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.8e-160 568.5 396 74.0
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 5.0e-160 568.2 408 73.0
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 6.6e-160 567.8 405 72.3
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 8.6e-160 567.4 396 72.7
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.1e-159 567.0 408 72.8
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.1e-159 567.0 406 73.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.5e-159 566.6 406 72.2
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.5e-159 566.6 406 72.9
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 3.3e-159 565.5 408 72.5
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 3.3e-159 565.5 403 73.4
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 5.5e-159 564.7 411 72.3
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 3.6e-158 562.0 399 72.4
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 8.0e-158 560.8 345 80.0
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 8.0e-158 560.8 397 72.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.4e-157 560.1 380 73.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 1.8e-157 559.7 363 76.9
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.7e-155 553.1 428 68.5
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.4e-154 549.3 408 71.1
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.2e-153 547.0 390 71.3
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 3.3e-151 538.9 353 74.5
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 7.3e-151 537.7 400 71.8
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 9.8e-148 527.3 398 70.1
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.7e-147 526.6 380 72.1
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.9e-147 525.0 393 71.8
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 1.9e-146 523.1 401 69.8
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 6.6e-144 514.6 401 69.8
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 3.3e-143 512.3 398 66.8
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 2.6e-140 502.7 401 67.6
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 4.1e-138 495.4 284 86.6
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.6e-137 493.4 360 70.0
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 4.7e-134 481.9 348 69.5
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.4e-130 469.5 373 66.2
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.0e-120 437.6 449 55.7
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.8e-109 400.2 337 58.8
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.6e-81 307.4 245 69.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 3.6e-81 306.2 258 64.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 9.7e-79 298.1 258 62.8
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.0e-72 276.6 160 81.2
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.5e-71 274.2 197 69.0
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.7e-67 260.8 220 66.4
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 4.2e-66 256.1 225 61.8
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 8.8e-64 248.4 203 59.1
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.0e-60 237.3 260 53.8
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 1.1e-58 231.5 165 76.4
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 4.8e-54 216.1 230 52.6
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 8.0e-49 198.7 205 53.7
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.1e-45 188.3 110 82.7
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 9.2e-45 185.3 110 80.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.7e-43 181.0 373 37.8
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.3e-42 175.6 188 55.9
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-41 174.5 188 55.3
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.8e-40 171.0 100 82.0
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.3e-40 170.6 141 67.4
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.9e-40 168.7 110 73.6
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.5e-39 167.9 177 56.5
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.4e-37 161.4 351 31.9
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 6.6e-35 152.5 287 33.1
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.2e-31 141.7 263 33.8
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 6.4e-30 136.0 78 87.2
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 3.6e-25 120.2 66 89.4
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-24 117.1 60 96.7
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.2e-23 115.2 256 31.6
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 2.1e-20 104.4 104 58.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.7e-20 104.0 53 96.2
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 3.5e-20 103.6 55 92.7
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 7.8e-20 102.4 209 29.7
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 7.8e-20 102.4 52 96.2
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-18 98.6 48 100.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.1e-18 98.6 48 100.0
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-18 98.6 52 94.2
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.3e-18 95.9 130 41.5
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 6.2e-17 92.8 49 85.7
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.3e-16 90.9 53 83.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.1e-16 90.5 51 78.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-15 88.6 50 86.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.5e-15 88.2 69 63.8
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 2.0e-15 87.8 76 65.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 2.0e-15 87.8 76 65.8
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 9.9e-15 85.5 62 67.7
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 1.3e-14 85.1 194 29.9
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.4e-14 82.8 85 54.1
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 9.2e-13 79.0 50 68.0
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 5.1e-11 73.2 43 83.7
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-09 68.6 40 82.5
FAN26G1376 Fragaria x ananassa HOM05D005270 ORTHO05D006466 3.6e-09 67.0 54 77.8
FAN24G0448 Fragaria x ananassa HOM05D002561 ORTHO05D006466 4.4e-07 60.1 59 69.5
FAN24G1197 Fragaria x ananassa HOM05D002561 ORTHO05D006466 4.4e-07 60.1 59 69.5
FAN24G1576 Fragaria x ananassa HOM05D002561 ORTHO05D006466 4.4e-07 60.1 59 69.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 4.9e-06 56.6 71 47.9


User provided reference genes

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