Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.1e-85 320.1 182 100.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.7e-71 270.8 182 74.7
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 2.2e-70 269.2 182 74.7
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.2e-70 269.2 182 74.2
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.2e-70 269.2 182 74.7
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.2e-68 263.5 182 73.6
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.4e-59 233.4 182 65.4
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 2.4e-56 222.6 183 62.8
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.6e-55 219.9 180 64.4
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 1.7e-54 216.5 179 72.6
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 3.0e-54 215.7 182 62.6
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 6.6e-54 214.5 179 69.3
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.9e-53 213.0 173 64.7
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 4.7e-52 208.4 175 61.7
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.8e-51 206.5 183 57.4
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 4.0e-51 205.3 176 61.4
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 4.0e-51 205.3 179 59.2
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 5.2e-51 204.9 177 59.9
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 6.8e-51 204.5 183 59.6
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 1.5e-50 203.4 182 65.9
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.5e-50 203.4 179 58.7
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 2.6e-50 202.6 179 59.8
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 7.5e-50 201.1 183 59.6
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 9.8e-50 200.7 182 58.8
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 9.8e-50 200.7 183 57.4
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 9.8e-50 200.7 182 65.9
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.2e-49 199.5 183 56.3
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 2.9e-49 199.1 181 58.6
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.9e-49 199.1 182 65.4
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.7e-49 198.7 183 56.8
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.9e-49 198.4 183 55.7
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.4e-48 196.8 177 57.1
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.6e-47 193.4 180 57.2
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 2.0e-47 193.0 182 58.8
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.0e-47 193.0 181 52.5
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 7.8e-47 191.0 182 65.4
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.0e-46 190.7 173 65.9
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.3e-46 190.3 183 55.2
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.7e-46 189.9 176 63.1
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 3.0e-46 189.1 179 53.6
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 3.0e-46 189.1 178 54.5
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 3.9e-46 188.7 182 52.2
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 6.6e-46 188.0 183 54.1
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 8.6e-46 187.6 175 54.9
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.1e-45 187.2 182 54.9
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.1e-45 187.2 183 54.1
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 1.9e-45 186.4 180 62.2
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.9e-45 186.4 182 57.1
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.5e-45 186.0 182 61.5
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.3e-45 185.7 182 54.4
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 3.3e-45 185.7 171 56.1
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.3e-45 185.3 182 51.6
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.6e-45 184.9 182 58.2
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 7.3e-45 184.5 186 59.7
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 9.5e-45 184.1 182 51.6
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 2.1e-44 183.0 180 58.3
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.8e-44 182.6 186 59.1
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.8e-44 182.6 182 59.3
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.8e-44 182.6 182 51.1
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 2.8e-44 182.6 183 53.0
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 8.1e-44 181.0 180 50.6
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.8e-43 179.9 182 58.2
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 2.3e-43 179.5 179 55.9
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 3.1e-43 179.1 186 54.8
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 2.6e-42 176.0 177 52.0
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 7.5e-42 174.5 182 58.8
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.3e-41 173.7 180 59.4
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.7e-41 173.3 180 55.0
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 2.9e-41 172.6 180 53.9
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 3.7e-41 172.2 175 49.7
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 4.9e-41 171.8 182 52.2
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 6.4e-41 171.4 177 56.5
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.2e-39 167.2 183 53.0
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.2e-39 167.2 183 53.0
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.8e-39 164.5 183 53.6
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.7e-38 163.3 185 54.6
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.3e-38 162.9 188 48.4
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 5.6e-37 158.3 178 50.0
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 9.5e-37 157.5 169 49.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 3.6e-36 155.6 171 48.5
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 3.6e-36 155.6 174 47.1
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 6.2e-36 154.8 118 61.9
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 3.1e-35 152.5 171 53.8
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 3.1e-35 152.5 180 55.6
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 4.0e-35 152.1 180 55.6
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 5.2e-35 151.8 171 47.4
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 5.2e-35 151.8 189 49.7
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 6.8e-35 151.4 120 60.8
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.2e-34 150.6 171 46.2
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.5e-34 150.2 173 46.2
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.0e-34 149.8 173 46.2
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 3.4e-34 149.1 174 47.7
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 4.4e-34 148.7 166 47.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 4.4e-34 148.7 171 47.4
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 5.8e-34 148.3 171 46.8
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 9.9e-34 147.5 177 46.3
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 9.9e-34 147.5 190 51.1
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 9.9e-34 147.5 172 44.8
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.7e-33 146.7 172 47.1
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 3.8e-33 145.6 175 46.9
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 3.8e-33 145.6 180 44.4
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 6.4e-33 144.8 182 45.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 8.4e-33 144.4 172 47.7
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.1e-32 144.1 178 43.3
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 3.2e-32 142.5 182 44.0
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.1e-31 139.8 178 48.9
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 6.0e-31 138.3 177 48.6
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 2.3e-30 136.3 178 43.3
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 5.1e-30 135.2 181 41.4
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 8.6e-30 134.4 182 41.8
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 2.5e-29 132.9 178 52.8
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 5.6e-29 131.7 178 41.0
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 9.6e-29 131.0 178 41.0
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 9.6e-29 131.0 178 41.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.6e-28 130.2 178 39.3
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 2.1e-28 129.8 178 39.3
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 2.8e-28 129.4 188 41.0
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 2.8e-28 129.4 188 41.0
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.8e-28 129.4 172 44.8
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.6e-28 129.0 184 39.7
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 4.7e-28 128.6 189 40.7
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 4.7e-28 128.6 189 40.7
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.1e-27 127.5 180 38.9
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 1.4e-27 127.1 178 41.0
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.8e-27 126.7 173 52.0
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 6.9e-27 124.8 181 40.3
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.9e-25 118.6 112 52.7
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 5.6e-21 105.1 114 50.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 4.8e-20 102.1 181 38.1
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.9e-13 80.1 187 27.3
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 2.4e-11 73.2 173 29.5
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 5.3e-11 72.0 179 30.2
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 3.2e-08 62.8 115 33.0


User provided reference genes

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