Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0201181 Rosa chinensis HOM05D007741 ORTHO05D014215 8.0e-44 179.9 81 100.0
RcHm_v2.0_Chr7g0213041 Rosa chinensis HOM05D007741 ORTHO05D014215 2.4e-40 168.3 81 95.1
RcHm_v2.0_Chr6g0312921 Rosa chinensis HOM05D007741 ORTHO05D014215 2.3e-35 151.8 70 95.7
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 1.5e-34 149.1 72 91.7
RcHm_v2.0_Chr6g0277431 Rosa chinensis HOM05D007741 ORTHO05D014215 4.4e-34 147.5 70 92.9
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 1.4e-24 115.9 82 72.0
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 2.4e-24 115.2 80 73.8
RcHm_v2.0_Chr1g0358041 Rosa chinensis HOM05D007741 ORTHO05D347005 3.9e-22 107.8 70 74.3
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 4.0e-19 97.8 69 71.0
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 4.0e-19 97.8 69 71.0
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 1.2e-18 96.3 71 67.6
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 1.5e-18 95.9 70 68.6
RcHm_v2.0_Chr7g0204801 Rosa chinensis HOM05D007741 ORTHO05D016318 1.3e-17 92.8 71 63.4
FAN23G2308 Fragaria x ananassa HOM05D007741 ORTHO05D014215 6.4e-17 90.5 79 60.8
RcHm_v2.0_Chr4g0442201 Rosa chinensis HOM05D028330 ORTHO05D342349 4.6e-15 84.3 75 58.7
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 2.3e-14 82.0 69 62.3
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 3.0e-14 81.6 69 65.2
FAN15G3031 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.0e-14 80.9 83 57.8
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 8.6e-14 80.1 80 46.2
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 9.5e-13 76.6 72 55.6
RcHm_v2.0_Chr7g0215471 Rosa chinensis HOM05D007741 ORTHO05D346134 1.6e-12 75.9 74 54.1
RcHm_v2.0_Chr1g0330531 Rosa chinensis HOM05D007741 ORTHO05D011461 6.2e-12 73.9 65 53.8
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 8.1e-12 73.6 60 56.7
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.4e-11 72.8 81 53.1
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 5.2e-11 70.9 76 55.3
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 1.2e-10 69.7 72 56.9
FAN28G2015 Fragaria x ananassa HOM05D010166 ORTHO05D205652 1.2e-10 69.7 72 56.9
RcHm_v2.0_Chr6g0280101 Rosa chinensis HOM05D007741 ORTHO05D343715 1.2e-10 69.7 65 52.3
FAN15G0375 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.5e-10 69.3 74 54.1
RcHm_v2.0_Chr6g0295101 Rosa chinensis HOM05D007741 ORTHO05D035834 1.5e-10 69.3 80 46.2
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 2.0e-10 68.9 60 53.3
RcHm_v2.0_Chr6g0245711 Rosa chinensis HOM05D000057 ORTHO05D000021 3.4e-10 68.2 47 66.0
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 9.9e-10 66.6 72 55.6
FAN04G0311 Fragaria x ananassa HOM05D007741 ORTHO05D209742 6.4e-09 63.9 68 52.9
FAN21G0226 Fragaria x ananassa HOM05D007741 ORTHO05D208582 1.1e-08 63.2 80 45.0
FAN19G0161 Fragaria x ananassa HOM05D007741 ORTHO05D204998 1.4e-08 62.8 81 46.9
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 1.9e-08 62.4 57 50.9
FAN02G1663 Fragaria x ananassa HOM05D007741 ORTHO05D014215 4.1e-08 61.2 70 45.7
FAN02G2687 Fragaria x ananassa HOM05D007741 ORTHO05D211123 7.1e-08 60.5 80 47.5
FAN11G3088 Fragaria x ananassa HOM05D010166 ORTHO05D210407 2.1e-07 58.9 54 57.4
FAN15G0259 Fragaria x ananassa HOM05D007741 ORTHO05D200480 2.1e-07 58.9 58 51.7
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 2.7e-07 58.5 58 50.0
FAN06G5096 Fragaria x ananassa HOM05D007741 ORTHO05D209952 7.8e-07 57.0 68 48.5
FAN10G0767 Fragaria x ananassa HOM05D007741 ORTHO05D204457 2.3e-06 55.5 80 43.8
RcHm_v2.0_Chr6g0279711 Rosa chinensis HOM05D007741 ORTHO05D016318 2.3e-06 55.5 48 54.2
FvH4_5g02251 Fragaria vesca HOM05D000005 ORTHO05D000294 3.0e-06 55.1 65 47.7
RcHm_v2.0_Chr4g0412841 Rosa chinensis HOM05D007741 ORTHO05D011461 3.0e-06 55.1 65 49.2
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 3.9e-06 54.7 66 45.5


User provided reference genes

Program Settings