Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0200971 Rosa chinensis HOM05D000108 ORTHO05D030904 8.8e-31 136.3 70 100.0
RcHm_v2.0_Chr7g0200461 Rosa chinensis HOM05D000108 ORTHO05D001724 1.0e-23 112.8 66 87.9
FAN04G0418 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.8e-23 112.1 66 87.9
FAN08G1861 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.8e-23 112.1 66 87.9
FAN13G2909 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.8e-23 112.1 66 87.9
FvH4_5g00930 Fragaria vesca HOM05D000108 ORTHO05D001724 6.7e-23 110.2 66 86.4
FAN18G3296 Fragaria x ananassa HOM05D000108 ORTHO05D001724 6.7e-23 110.2 66 86.4
MD04G1077000 Malus domestica HOM05D000108 ORTHO05D001724 4.8e-21 104.0 66 80.3
MD06G1067900 Malus domestica HOM05D000108 ORTHO05D001724 5.3e-20 100.5 66 78.8
Prupe.5G082300 Prunus persica HOM05D000108 ORTHO05D001724 9.1e-20 99.8 66 77.3
GSVIVG01019931001 Vitis vinifera HOM05D000108 ORTHO05D001724 5.0e-18 94.0 67 74.6
GSVIVG01019928001 Vitis vinifera HOM05D000108 ORTHO05D001724 1.4e-17 92.4 67 73.1
MBI04_g32257_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 3.2e-17 91.3 67 74.6
Atru.chr9.1470 Acer truncatum HOM05D000108 ORTHO05D001724 1.6e-16 89.0 67 71.6
TAR374G0497 Trochodendron aralioides HOM05D000108 ORTHO05D001724 6.1e-16 87.0 67 68.7
CiPaw.12G103000 Carya illinoinensis HOM05D000108 ORTHO05D001724 1.8e-15 85.5 67 68.7
TAR375G0081 Trochodendron aralioides HOM05D000108 ORTHO05D001724 1.8e-15 85.5 67 70.1
Dinv39059 Davidia involucrata HOM05D000108 ORTHO05D001724 3.0e-15 84.7 67 71.6
MELO3C005594.2 Cucumis melo HOM05D000108 ORTHO05D001724 3.9e-15 84.3 67 67.2
CsaV3_5G003600 Cucumis sativus L. HOM05D000108 ORTHO05D001724 3.9e-15 84.3 67 67.2
Thecc.03G264000 Theobroma cacao HOM05D000108 ORTHO05D001724 5.2e-15 84.0 67 73.1
CSS0003501 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.1e-14 82.8 66 66.7
Ciclev10018779m.g Citrus clementina HOM05D000108 ORTHO05D001724 1.5e-14 82.4 67 71.6
ClCG01G003500 Citrullus lanatus HOM05D000108 ORTHO05D001724 2.0e-14 82.0 67 65.7
MBI12_g34477_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 2.0e-14 82.0 67 67.2
Nn4g26430 Nelumbo nucifera HOM05D000108 ORTHO05D001724 2.0e-14 82.0 67 67.2
Nn1g01197 Nelumbo nucifera HOM05D000108 ORTHO05D001724 2.6e-14 81.6 67 65.7
QL12p015521 Quercus lobata HOM05D000108 ORTHO05D001724 2.6e-14 81.6 67 68.7
Aqoxy7G00592 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 3.3e-14 81.3 67 64.2
Gohir.D09G188700 Gossypium hirsutum HOM05D000108 ORTHO05D001724 3.3e-14 81.3 67 70.1
Gorai.006G211400 Gossypium raimondii HOM05D000108 ORTHO05D001724 3.3e-14 81.3 67 70.1
Potri.001G115100 Populus trichocarpa HOM05D000108 ORTHO05D001724 3.3e-14 81.3 67 65.7
Dinv37742 Davidia involucrata HOM05D000108 ORTHO05D001724 4.4e-14 80.9 67 65.7
Duzib084G0636 Durio zibethinus HOM05D000108 ORTHO05D001724 4.4e-14 80.9 67 70.1
TAR629G2306 Trochodendron aralioides HOM05D000108 ORTHO05D001724 4.4e-14 80.9 67 67.2
Gohir.D12G224700 Gossypium hirsutum HOM05D000108 ORTHO05D001724 5.7e-14 80.5 67 68.7
Gorai.008G240800 Gossypium raimondii HOM05D000108 ORTHO05D001724 5.7e-14 80.5 67 68.7
Gohir.A12G222200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 7.4e-14 80.1 67 68.7
Sabra01G0088200 Salix brachista HOM05D000108 ORTHO05D001724 1.3e-13 79.3 67 64.2
Actinidia05245 Actinidia chinensis HOM05D000108 ORTHO05D001724 1.7e-13 79.0 61 65.6
CiPaw.11G145500 Carya illinoinensis HOM05D000108 ORTHO05D001724 1.7e-13 79.0 67 64.2
Lj2A205T62 Lonicera japonica HOM05D000108 ORTHO05D001724 1.7e-13 79.0 67 65.7
vmacro14032 Vaccinium macrocarpon HOM05D000108 ORTHO05D001724 1.7e-13 79.0 67 62.7
ATR0810G119 Amborella trichopoda HOM05D000108 ORTHO05D001724 2.2e-13 78.6 67 62.7
CDE09G0112 Ceratophyllum demersum HOM05D000108 ORTHO05D001724 2.2e-13 78.6 67 64.2
Gohir.A09G194400 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.2e-13 78.6 67 68.7
CDE11G0991 Ceratophyllum demersum HOM05D000108 ORTHO05D001724 2.8e-13 78.2 67 64.2
Eucgr.E00490 Eucalyptus grandis HOM05D000108 ORTHO05D001724 2.8e-13 78.2 65 64.6
Sabra03G0081400 Salix brachista HOM05D000108 ORTHO05D001724 2.8e-13 78.2 67 65.7
Oeu025548.1 Olea europaea HOM05D000108 ORTHO05D001724 3.7e-13 77.8 67 61.2
COL.COLO4_23842 Corchorus olitorius HOM05D000108 ORTHO05D001724 6.3e-13 77.0 67 67.2
Duzib068G1239 Durio zibethinus HOM05D000108 ORTHO05D001724 8.2e-13 76.6 67 67.2
Potri.003G117000 Populus trichocarpa HOM05D000108 ORTHO05D001724 8.2e-13 76.6 67 61.2
Lalb_Chr16g0379861 Lupinus albus HOM05D000108 ORTHO05D001724 1.1e-12 76.3 67 64.2
Manes.02G032100 Manihot esculenta HOM05D000108 ORTHO05D001724 1.4e-12 75.9 67 61.2
Glyma.11G028700 Glycine max HOM05D000108 ORTHO05D001724 1.8e-12 75.5 67 65.7
Manes.01G071500 Manihot esculenta HOM05D000108 ORTHO05D001724 1.8e-12 75.5 67 61.2
Sed0008979 Sechium edule HOM05D000108 ORTHO05D001724 2.4e-12 75.1 68 63.2
Rhsim07G0100200 Rhododendron simsii HOM05D000108 ORTHO05D001724 4.1e-12 74.3 68 61.8
CSS0003519 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 7.0e-12 73.6 67 62.7
Cfa001705 Carpinus fangiana HOM05D000108 ORTHO05D001724 7.0e-12 73.6 63 63.5
TWI59G0277 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 7.0e-12 73.6 67 58.2
Actinidia02073 Actinidia chinensis HOM05D000108 ORTHO05D001724 9.1e-12 73.2 65 63.1
PGR042G0519 Punica granatum HOM05D000108 ORTHO05D001724 9.1e-12 73.2 67 56.7
PSO478G0319 Papaver somniferum HOM05D000108 ORTHO05D001724 1.2e-11 72.8 67 59.7
Cfa012039 Carpinus fangiana HOM05D000108 ORTHO05D001724 1.6e-11 72.4 66 63.6
Glyma.01G213200 Glycine max HOM05D000108 ORTHO05D001724 1.6e-11 72.4 67 62.7
Medtr5g011500 Medicago truncatula HOM05D000108 ORTHO05D001724 1.6e-11 72.4 67 64.2
PSO782G3020 Papaver somniferum HOM05D000108 ORTHO05D001724 1.6e-11 72.4 67 59.7
Hund14670 Selenicereus undatus HOM05D000108 ORTHO05D001724 1.6e-11 72.4 67 58.2
Actinidia14480 Actinidia chinensis HOM05D000108 ORTHO05D030904 2.0e-11 72.0 71 56.3
HPP92_002111 Vanilla planifolia HOM05D000108 ORTHO05D001724 2.0e-11 72.0 67 59.7
HPP92_002119 Vanilla planifolia HOM05D000108 ORTHO05D001724 2.0e-11 72.0 67 59.7
HPP92_002132 Vanilla planifolia HOM05D002309 ORTHO05D030904 2.0e-11 72.0 67 59.7
DCAR_000867 Daucus carota HOM05D000108 ORTHO05D001724 2.6e-11 71.6 67 58.2
Haze_16828 Corylus avellana HOM05D000108 ORTHO05D001724 3.5e-11 71.2 63 61.9
THA.LOC104818319 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 4.5e-11 70.9 67 56.7
GSVIVG01027626001 Vitis vinifera HOM05D000108 ORTHO05D001724 5.9e-11 70.5 65 60.0
Sc22g0000470 Simmondsia chinensis HOM05D000108 ORTHO05D001724 7.7e-11 70.1 67 58.2
CAN.G630.41 Capsicum annuum HOM05D000108 ORTHO05D001724 1.3e-10 69.3 67 59.7
Lj2g0001163 Lotus japonicus HOM05D000108 ORTHO05D001724 1.3e-10 69.3 67 61.2
TPR.G19561 Trifolium pratense HOM05D000108 ORTHO05D001724 1.3e-10 69.3 67 59.7
A06p09190 Brassica napus HOM05D000108 ORTHO05D001724 1.7e-10 68.9 68 55.9
Ca_06682_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001724 1.7e-10 68.9 67 62.7
Ah.12g058040 Amaranthus hybridus HOM05D000108 ORTHO05D001724 2.2e-10 68.6 67 61.2
BraA06t24105Z Brassica rapa HOM05D000108 ORTHO05D001724 2.9e-10 68.2 68 54.4
Carub.0001s1213 Capsella rubella HOM05D000108 ORTHO05D001724 2.9e-10 68.2 67 55.2
AT1G12430 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 3.8e-10 67.8 67 55.2
C05p10770 Brassica napus HOM05D000108 ORTHO05D001724 3.8e-10 67.8 68 54.4
BolC5t29818H Brassica oleracea HOM05D000108 ORTHO05D001724 3.8e-10 67.8 68 54.4
Psat2g180240 Pisum sativum HOM05D000108 ORTHO05D001724 3.8e-10 67.8 68 58.8
BcaC05g25191 Brassica carinata HOM05D000108 ORTHO05D001724 5.0e-10 67.4 67 53.7
Sed0017647 Sechium edule HOM05D000108 ORTHO05D001724 5.0e-10 67.4 67 56.7
Cc08_g13470 Coffea canephora HOM05D000108 ORTHO05D001724 6.5e-10 67.0 67 55.2
Haze_09037 Corylus avellana HOM05D000108 ORTHO05D001724 6.5e-10 67.0 72 58.3
ECA246G3154 Erigeron canadensis HOM05D000108 ORTHO05D001724 6.5e-10 67.0 53 60.4
Thhalv10006731m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 6.5e-10 67.0 67 53.7
Lj1g0025753 Lotus japonicus HOM05D000108 ORTHO05D001724 6.5e-10 67.0 51 62.7
AL1G23770 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 8.5e-10 66.6 67 53.7
CARHR012720 Cardamine hirsuta HOM05D000108 ORTHO05D001724 8.5e-10 66.6 67 53.7
Glyma.01G144500 Glycine max HOM05D000108 ORTHO05D001724 8.5e-10 66.6 51 64.7
Lalb_Chr05g0214681 Lupinus albus HOM05D000108 ORTHO05D001724 8.5e-10 66.6 67 56.7
Phvul.002G151700 Phaseolus vulgaris HOM05D000108 ORTHO05D001724 1.1e-09 66.2 74 55.4
Solyc08g079710.3 Solanum lycopersicum HOM05D000108 ORTHO05D001724 1.1e-09 66.2 67 58.2
Sopen08g028070 Solanum pennellii HOM05D000108 ORTHO05D001724 1.1e-09 66.2 67 58.2
THA.LOC104823561 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 1.1e-09 66.2 68 54.4
Aa31LG1G2190 Aethionema arabicum HOM05D000108 ORTHO05D001724 1.5e-09 65.9 67 53.7
MSTRG.13793 Avicennia marina HOM05D000108 ORTHO05D001724 1.5e-09 65.9 65 53.8
Migut.E01008 Erythranthe guttata HOM05D000108 ORTHO05D001724 1.5e-09 65.9 65 52.3
Peaxi162Scf00620g00119 Petunia axillaris HOM05D000108 ORTHO05D001724 1.5e-09 65.9 67 58.2
PGSC0003DMG400003947 Solanum tuberosum HOM05D000108 ORTHO05D001724 1.5e-09 65.9 67 58.2
AUR62017366 Chenopodium quinoa HOM05D000108 ORTHO05D001724 1.9e-09 65.5 69 56.5
Ca_07827_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001724 1.9e-09 65.5 50 64.0
Migut.O00527 Erythranthe guttata HOM05D000108 ORTHO05D001724 1.9e-09 65.5 65 52.3
Sabra02G0118200 Salix brachista HOM05D000108 ORTHO05D001724 2.5e-09 65.1 65 53.8
CiPaw.01G260900 Carya illinoinensis HOM05D000108 ORTHO05D001724 3.2e-09 64.7 63 55.6
HanXRQChr06g0164861 Helianthus annuus HOM05D000108 ORTHO05D001724 3.2e-09 64.7 52 61.5
Sp1g11030 Schrenkiella parvula HOM05D000108 ORTHO05D001724 3.2e-09 64.7 67 52.2
Manes.05G044100 Manihot esculenta HOM05D000108 ORTHO05D001724 4.2e-09 64.3 67 52.2
AUR62010531 Chenopodium quinoa HOM05D000108 ORTHO05D001724 5.5e-09 63.9 69 55.1
Glyma.18G221600 Glycine max HOM05D000108 ORTHO05D001724 5.5e-09 63.9 64 53.1
PGR031G3693 Punica granatum HOM05D000108 ORTHO05D001724 5.5e-09 63.9 66 51.5
EL10Ac5g12646 Beta vulgaris HOM05D000108 ORTHO05D001724 9.4e-09 63.2 66 53.0
CiPaw.02G166600 Carya illinoinensis HOM05D000108 ORTHO05D001724 9.4e-09 63.2 65 55.4
Dinv43723 Davidia involucrata HOM05D000108 ORTHO05D001724 1.2e-08 62.8 67 55.2
arahy.Tifrunner.gnm1.ann1.G6Q9UC Arachis hypogaea HOM05D000108 ORTHO05D001724 2.1e-08 62.0 51 54.9
arahy.Tifrunner.gnm1.ann1.JQ4NV0 Arachis hypogaea HOM05D000108 ORTHO05D001724 2.1e-08 62.0 51 56.9
arahy.Tifrunner.gnm1.ann1.ZG9BLK Arachis hypogaea HOM05D000108 ORTHO05D001724 2.1e-08 62.0 51 56.9
Glyma.09G268300 Glycine max HOM05D000108 ORTHO05D001724 2.1e-08 62.0 51 60.8
Psat3g114320 Pisum sativum HOM05D000108 ORTHO05D001724 2.1e-08 62.0 65 52.3
Lsat_1_v5_gn_3_5240 Lactuca sativa HOM05D000108 ORTHO05D001724 2.7e-08 61.6 67 53.7
Medtr7g075060 Medicago truncatula HOM05D000108 ORTHO05D001724 2.7e-08 61.6 50 60.0
SalBow1G0671 Salvia bowleyana HOM05D000108 ORTHO05D001724 2.7e-08 61.6 65 49.2
Cpa.g.sc18.127 Carica papaya HOM05D000108 ORTHO05D017199 3.6e-08 61.2 65 50.8
VMungo1215G3104 Vigna mungo HOM05D000108 ORTHO05D001724 4.7e-08 60.8 69 55.1
Dinv32384 Davidia involucrata HOM05D000108 ORTHO05D001724 6.1e-08 60.5 66 56.1
Lalb_Chr03g0039161 Lupinus albus HOM05D000108 ORTHO05D001724 6.1e-08 60.5 65 50.8
Potri.014G070900 Populus trichocarpa HOM05D000108 ORTHO05D001724 6.1e-08 60.5 63 52.4
TPR.G26941 Trifolium pratense HOM05D000108 ORTHO05D001724 6.1e-08 60.5 50 58.0
SEGI_23240 Sequoiadendron giganteum HOM05D000108 ORTHO05D001724 8.0e-08 60.1 67 49.3
Ciclev10018796m.g Citrus clementina HOM05D000108 ORTHO05D001724 1.0e-07 59.7 43 65.1
Pp3c6_19520 Physcomitrium patens HOM05D000108 ORTHO05D001724 1.0e-07 59.7 59 49.2
Prupe.2G147100 Prunus persica HOM05D000108 ORTHO05D001724 1.0e-07 59.7 65 53.8
TWI81G0333 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 1.0e-07 59.7 67 59.7
Zm00001eb270080 Zea mays HOM05D000108 ORTHO05D001724 1.4e-07 59.3 67 50.7
Zm00001eb377830 Zea mays HOM05D000108 ORTHO05D001724 1.4e-07 59.3 60 51.7
Potri.002G149400 Populus trichocarpa HOM05D000108 ORTHO05D001724 1.8e-07 58.9 65 50.8
MD02G1201700 Malus domestica HOM05D000108 ORTHO05D001724 3.0e-07 58.2 65 49.2
Cc02_g36560 Coffea canephora HOM05D000108 ORTHO05D001724 4.0e-07 57.8 60 53.3
Pp3c16_2830 Physcomitrium patens HOM05D000108 ORTHO05D001724 4.0e-07 57.8 59 49.2
Pp3c27_850 Physcomitrium patens HOM05D000108 ORTHO05D001724 5.2e-07 57.4 59 49.2
Pp3c2_28160 Physcomitrium patens HOM05D000108 ORTHO05D001724 5.2e-07 57.4 68 47.1
Pp3c2_28162 Physcomitrium patens HOM05D000108 ORTHO05D001724 5.2e-07 57.4 68 47.1
FvH4_7g12050 Fragaria vesca HOM05D000108 ORTHO05D001724 6.7e-07 57.0 62 50.0
RcHm_v2.0_Chr1g0350761 Rosa chinensis HOM05D000108 ORTHO05D001724 8.8e-07 56.6 64 51.6
Sabra14G0050400 Salix brachista HOM05D000108 ORTHO05D001724 8.8e-07 56.6 67 46.3
Peaxi162Scf00021g01412 Petunia axillaris HOM05D000108 ORTHO05D001724 1.5e-06 55.8 60 55.0
Sabra09G0025500 Salix brachista HOM05D002182 ORTHO05D004671 1.5e-06 55.8 67 46.3
Sabra14G0026900 Salix brachista HOM05D002182 ORTHO05D004671 1.5e-06 55.8 67 46.3
Solyc01g091480.4 Solanum lycopersicum HOM05D000108 ORTHO05D001724 1.5e-06 55.8 60 55.0
Sopen01g037240 Solanum pennellii HOM05D000108 ORTHO05D001724 1.5e-06 55.8 60 55.0
Nitab4.5_0002993g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001724 2.0e-06 55.5 60 53.3
Actinidia12271 Actinidia chinensis HOM05D000108 ORTHO05D001724 2.6e-06 55.1 65 47.7
Phvul.008G075500 Phaseolus vulgaris HOM05D000108 ORTHO05D001724 2.6e-06 55.1 56 50.0
CSS0021324 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 3.3e-06 54.7 65 46.2
Lj7A527G67 Lonicera japonica HOM05D000108 ORTHO05D001724 3.3e-06 54.7 45 57.8
VMungo1383G2220 Vigna mungo HOM05D000108 ORTHO05D001724 3.3e-06 54.7 56 50.0
CANSAT56G4057 Cannabis sativa HOM05D000108 ORTHO05D001724 4.4e-06 54.3 51 56.9
Nitab4.5_0000457g0410 Nicotiana tabacum HOM05D000108 ORTHO05D001724 4.4e-06 54.3 60 51.7
SMO351G0483 Selaginella moellendorffii HOM05D000108 ORTHO05D001724 5.7e-06 53.9 65 46.2
Actinidia31421 Actinidia chinensis HOM05D000108 ORTHO05D001724 7.5e-06 53.5 64 48.4
Migut.B01646 Erythranthe guttata HOM05D000108 ORTHO05D001724 7.5e-06 53.5 51 56.9
Hund17010 Selenicereus undatus HOM05D000108 ORTHO05D001724 7.5e-06 53.5 68 44.1


User provided reference genes

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