Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0200961 Rosa chinensis HOM05D000343 ORTHO05D344196 6.1e-58 227.3 114 100.0
RcHm_v2.0_Chr5g0020701 Rosa chinensis HOM05D000343 ORTHO05D000975 1.5e-08 63.2 38 84.2
Carub.0008s0346 Capsella rubella HOM05D000343 ORTHO05D000975 2.0e-08 62.8 38 84.2
Duzib132G0104 Durio zibethinus HOM05D000343 ORTHO05D000975 2.0e-08 62.8 38 81.6
AL8G14730 Arabidopsis lyrata HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
BcaC06g31586 Brassica carinata HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
BcaC06g34504 Brassica carinata HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
A06p46880 Brassica napus HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
C07p27770 Brassica napus HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
BolC7t43309H Brassica oleracea HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
BraA06t27561Z Brassica rapa HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
CARHR178080 Cardamine hirsuta HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
MD10G1228800 Malus domestica HOM05D000343 ORTHO05D000975 3.4e-08 62.0 41 78.0
Sp2g09640 Schrenkiella parvula HOM05D000343 ORTHO05D000975 3.4e-08 62.0 38 81.6
A09p21340 Brassica napus HOM05D000343 ORTHO05D000975 4.5e-08 61.6 38 78.9
CSS0014840 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D000975 5.8e-08 61.2 38 81.6
Prupe.4G115900 Prunus persica HOM05D000343 ORTHO05D000975 7.6e-08 60.8 38 81.6
BcaC04g21815 Brassica carinata HOM05D000343 ORTHO05D000975 9.9e-08 60.5 38 76.3
C09p27180 Brassica napus HOM05D000343 ORTHO05D000975 9.9e-08 60.5 38 76.3
FAN21G3394 Fragaria x ananassa HOM05D000343 ORTHO05D000975 9.9e-08 60.5 38 78.9
Rhsim02G0169300 Rhododendron simsii HOM05D000343 ORTHO05D000975 9.9e-08 60.5 38 78.9
Thhalv10000758m.g Eutrema salsugineum HOM05D000343 ORTHO05D000975 1.3e-07 60.1 38 78.9
THA.LOC104811764 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 1.3e-07 60.1 38 81.6
Aa31LG9G8380 Aethionema arabicum HOM05D000343 ORTHO05D000975 1.7e-07 59.7 38 78.9
AT5G44790 Arabidopsis thaliana HOM05D000343 ORTHO05D000975 1.7e-07 59.7 38 78.9
BolC9t55599H Brassica oleracea HOM05D000343 ORTHO05D000975 1.7e-07 59.7 38 76.3
Actinidia31364 Actinidia chinensis HOM05D000343 ORTHO05D021090 2.2e-07 59.3 38 78.9
BcaB07g30924 Brassica carinata HOM05D000343 ORTHO05D000975 2.2e-07 59.3 38 73.7
Sabra01G0132900 Salix brachista HOM05D000343 ORTHO05D000975 2.2e-07 59.3 38 78.9
THA.LOC104806219 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 2.2e-07 59.3 38 81.6
CANSAT35G0769 Cannabis sativa HOM05D000343 ORTHO05D000975 2.9e-07 58.9 38 78.9
Dinv31173 Davidia involucrata HOM05D000343 ORTHO05D000975 2.9e-07 58.9 38 78.9
Hma1.2p1_0088F.1_g045010 Hydrangea macrophylla HOM05D000343 ORTHO05D000975 2.9e-07 58.9 38 78.9
Thecc.02G005600 Theobroma cacao HOM05D000343 ORTHO05D000975 2.9e-07 58.9 38 78.9
GSVIVG01012131001 Vitis vinifera HOM05D000343 ORTHO05D000975 2.9e-07 58.9 38 78.9
Gohir.A12G048300 Gossypium hirsutum HOM05D000343 ORTHO05D000975 3.8e-07 58.5 38 76.3
QL11p012985 Quercus lobata HOM05D000343 ORTHO05D000975 3.8e-07 58.5 38 78.9
COL.COLO4_17630 Corchorus olitorius HOM05D000343 ORTHO05D000975 4.9e-07 58.2 38 76.3
MD05G1247900 Malus domestica HOM05D000343 ORTHO05D000975 4.9e-07 58.2 38 78.9
CDE06G1492 Ceratophyllum demersum HOM05D000343 ORTHO05D000975 6.4e-07 57.8 38 73.7
FAN25G2128 Fragaria x ananassa HOM05D000343 ORTHO05D000975 6.4e-07 57.8 38 76.3
Lj2C343G15 Lonicera japonica HOM05D000343 ORTHO05D000975 8.4e-07 57.4 38 76.3
Potri.001G158900 Populus trichocarpa HOM05D000343 ORTHO05D000975 8.4e-07 57.4 38 76.3
Potri.003G075700 Populus trichocarpa HOM05D000343 ORTHO05D000975 8.4e-07 57.4 38 76.3
Sabra03G0046200 Salix brachista HOM05D000343 ORTHO05D000975 8.4e-07 57.4 38 76.3
Aa31LG6G2420 Aethionema arabicum HOM05D000343 ORTHO05D000975 1.1e-06 57.0 38 76.3
Duzib248G0157 Durio zibethinus HOM05D000343 ORTHO05D000975 1.1e-06 57.0 38 76.3
Gohir.D12G047100 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.1e-06 57.0 38 73.7
Gorai.008G049700 Gossypium raimondii HOM05D000343 ORTHO05D000975 1.1e-06 57.0 38 73.7
Manes.16G060400 Manihot esculenta HOM05D000343 ORTHO05D000975 1.4e-06 56.6 38 73.7
Sed0017485 Sechium edule HOM05D000343 ORTHO05D000975 1.4e-06 56.6 38 76.3
ClCG01G025580 Citrullus lanatus HOM05D000343 ORTHO05D000975 2.4e-06 55.8 38 73.7
MELO3C007027.2 Cucumis melo HOM05D000343 ORTHO05D000975 2.4e-06 55.8 38 76.3
CsaV3_6G052820 Cucumis sativus L. HOM05D000343 ORTHO05D000975 2.4e-06 55.8 38 76.3
Lsat_1_v5_gn_5_47401 Lactuca sativa HOM05D000343 ORTHO05D000975 2.4e-06 55.8 38 76.3
Ah.15g091900 Amaranthus hybridus HOM05D000343 ORTHO05D000975 3.2e-06 55.5 38 68.4
Manes.03G074800 Manihot esculenta HOM05D000343 ORTHO05D000975 4.2e-06 55.1 38 73.7
CiPaw.10G062500 Carya illinoinensis HOM05D000343 ORTHO05D000975 5.5e-06 54.7 38 71.1
AUR62040482 Chenopodium quinoa HOM05D000343 ORTHO05D000975 5.5e-06 54.7 38 71.1
Oeu056056.1 Olea europaea HOM05D000343 ORTHO05D000975 5.5e-06 54.7 38 71.1
Cfa000665 Carpinus fangiana HOM05D000343 ORTHO05D000975 7.1e-06 54.3 38 73.7
AUR62042799 Chenopodium quinoa HOM05D000343 ORTHO05D000975 7.1e-06 54.3 38 71.1
Haze_06155 Corylus avellana HOM05D000343 ORTHO05D000975 7.1e-06 54.3 38 73.7
MSTRG.16366 Avicennia marina HOM05D000343 ORTHO05D000975 9.3e-06 53.9 38 71.1
CSS0006094 Camellia sinensis var. sinensis HOM05D002017 ORTHO05D002042 9.3e-06 53.9 47 66.0
CiPaw.09G073800 Carya illinoinensis HOM05D000343 ORTHO05D000975 9.3e-06 53.9 38 71.1
Eucgr.D00027 Eucalyptus grandis HOM05D000343 ORTHO05D000975 9.3e-06 53.9 38 71.1
Nitab4.5_0000138g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 9.3e-06 53.9 41 63.4
Nitab4.5_0000443g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 9.3e-06 53.9 36 69.4
Nitab4.5_0008021g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 9.3e-06 53.9 38 71.1


User provided reference genes

Program Settings