Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 1.5e-68 262.7 129 100.0
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.3e-15 85.5 87 57.5
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.3e-13 79.3 86 53.5
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.3e-13 79.3 86 53.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.3e-13 79.3 86 53.5
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.0e-13 78.6 86 52.3
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.2e-13 78.2 88 51.1
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 8.9e-13 77.4 87 54.0
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.2e-12 77.0 86 52.3
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 1.5e-12 76.6 86 52.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 4.4e-12 75.1 86 51.2
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 7.5e-12 74.3 86 50.0
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.3e-11 73.6 92 46.7
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.7e-11 73.2 86 50.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 2.2e-11 72.8 86 50.0
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 2.2e-11 72.8 86 50.0
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.9e-11 72.4 86 48.8
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 3.7e-11 72.0 86 47.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 4.9e-11 71.6 86 47.7
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 4.9e-11 71.6 86 48.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 6.4e-11 71.2 86 47.7
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 8.3e-11 70.9 86 48.8
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.3e-11 70.9 86 47.7
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.9e-10 69.7 86 46.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 1.9e-10 69.7 86 47.7
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.9e-10 69.7 87 49.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.4e-10 69.3 86 47.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 2.4e-10 69.3 86 48.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 2.4e-10 69.3 86 47.7
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 2.4e-10 69.3 86 47.7
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.4e-10 69.3 86 46.5
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 3.2e-10 68.9 86 45.3
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 3.2e-10 68.9 86 46.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 3.2e-10 68.9 86 46.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.1e-10 68.6 86 47.7
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 4.1e-10 68.6 86 46.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.1e-10 68.6 86 46.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.1e-10 68.6 86 46.5
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 4.1e-10 68.6 86 46.5
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 5.4e-10 68.2 86 46.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 7.0e-10 67.8 87 47.1
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 7.0e-10 67.8 86 45.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 46.5
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 46.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 46.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 46.5
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 45.3
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 9.2e-10 67.4 86 45.3
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.2e-09 67.0 86 43.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 1.2e-09 67.0 86 46.5
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.2e-09 67.0 86 45.3
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 1.2e-09 67.0 84 45.2
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 1.2e-09 67.0 86 46.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.7e-09 65.9 82 47.6
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 3.5e-09 65.5 86 47.7
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 4.6e-09 65.1 86 43.0
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 4.6e-09 65.1 86 44.2
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 4.6e-09 65.1 86 43.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 4.6e-09 65.1 84 47.6
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 4.6e-09 65.1 86 44.2
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 6.0e-09 64.7 86 45.3
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 6.0e-09 64.7 86 43.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 6.0e-09 64.7 86 44.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 7.8e-09 64.3 86 45.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 7.8e-09 64.3 86 45.3
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 7.8e-09 64.3 81 48.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.0e-08 63.9 86 44.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.0e-08 63.9 81 46.9
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.0e-08 63.9 86 45.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.3e-08 63.5 81 46.9
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-08 63.5 81 46.9
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.3e-08 63.5 86 45.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.3e-08 63.5 82 46.3
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.7e-08 63.2 81 46.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 1.7e-08 63.2 81 46.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 1.7e-08 63.2 81 46.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.7e-08 63.2 86 46.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.3e-08 62.8 84 44.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 2.3e-08 62.8 83 44.6
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.3e-08 62.8 81 46.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 2.3e-08 62.8 86 43.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 3.0e-08 62.4 80 47.5
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 3.9e-08 62.0 86 43.0
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 3.9e-08 62.0 81 46.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 3.9e-08 62.0 81 46.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 3.9e-08 62.0 82 45.1
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 5.0e-08 61.6 81 46.9
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 5.0e-08 61.6 54 61.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 6.6e-08 61.2 81 45.7
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 6.6e-08 61.2 82 45.1
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 8.6e-08 60.8 86 44.2
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 8.6e-08 60.8 86 44.2
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.9e-07 59.7 84 41.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 2.5e-07 59.3 82 45.1
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 5.6e-07 58.2 84 42.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 9.5e-07 57.4 40 67.5
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 9.5e-07 57.4 85 43.5
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 9.5e-07 57.4 86 40.7
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.5e-07 57.4 40 70.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.2e-06 57.0 99 44.4
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.6e-06 56.6 85 43.5
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.6e-06 56.6 85 43.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.1e-06 54.3 33 72.7


User provided reference genes

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