Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 1.1e-94 350.1 199 100.0
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 4.6e-61 238.4 185 75.1
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.6e-61 238.4 185 75.1
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 9.7e-59 230.7 200 71.0
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 1.9e-54 216.5 206 66.0
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.9e-54 216.5 207 66.2
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.5e-54 216.1 207 65.7
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 8.5e-47 191.0 195 61.5
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 3.0e-44 182.6 195 57.9
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.0e-44 182.2 195 57.9
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 3.3e-43 179.1 195 55.4
FAN13G1062 Fragaria x ananassa HOM05D004083 ORTHO05D005029 5.5e-38 161.8 205 57.6
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.1e-37 159.8 153 67.3
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 1.3e-31 140.6 182 56.0
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 2.9e-31 139.4 179 56.4
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 3.8e-31 139.0 182 53.8
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 8.5e-31 137.9 180 56.7
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 1.1e-30 137.5 185 51.9
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 5.5e-30 135.2 179 55.9
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 5.5e-30 135.2 179 54.2
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 9.5e-30 134.4 179 53.6
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 2.1e-29 133.3 185 49.7
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 2.1e-29 133.3 186 53.2
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 2.8e-29 132.9 179 54.7
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 3.6e-29 132.5 185 51.4
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 4.7e-29 132.1 179 55.3
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 6.1e-29 131.7 179 54.2
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 8.0e-29 131.3 179 53.6
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 8.0e-29 131.3 181 54.7
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 1.0e-28 131.0 182 52.2
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 1.0e-28 131.0 182 51.6
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 1.0e-28 131.0 181 56.9
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 1.4e-28 130.6 181 55.8
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 1.8e-28 130.2 182 51.1
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 1.8e-28 130.2 179 52.5
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 2.3e-28 129.8 181 55.2
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 2.3e-28 129.8 181 55.2
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 2.3e-28 129.8 179 50.8
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 2.3e-28 129.8 180 50.6
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 4.0e-28 129.0 183 54.1
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 4.0e-28 129.0 199 49.7
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 5.2e-28 128.6 184 49.5
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 5.2e-28 128.6 185 54.1
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 6.8e-28 128.3 182 52.2
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 1.2e-27 127.5 183 51.9
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 1.2e-27 127.5 180 51.1
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 1.5e-27 127.1 179 48.0
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 1.5e-27 127.1 185 51.9
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 1.5e-27 127.1 180 53.9
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 2.6e-27 126.3 179 53.1
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 4.4e-27 125.6 199 49.7
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 5.7e-27 125.2 181 55.2
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 7.5e-27 124.8 178 52.2
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 9.8e-27 124.4 202 47.5
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 9.8e-27 124.4 185 49.7
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 9.8e-27 124.4 183 49.2
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 1.3e-26 124.0 179 43.6
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 2.2e-26 123.2 174 54.6
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 3.7e-26 122.5 183 49.2
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 3.7e-26 122.5 179 50.8
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 4.9e-26 122.1 190 53.2
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 6.3e-26 121.7 171 55.6
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 6.3e-26 121.7 201 45.3
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 6.3e-26 121.7 185 49.2
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 1.1e-25 120.9 178 51.7
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 1.1e-25 120.9 196 48.5
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 1.8e-25 120.2 194 42.3
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.8e-25 120.2 176 48.9
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 2.4e-25 119.8 184 41.3
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 2.4e-25 119.8 184 43.5
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 3.1e-25 119.4 183 45.4
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 3.1e-25 119.4 183 53.6
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 4.1e-25 119.0 183 49.2
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 7.0e-25 118.2 187 48.7
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 1.6e-24 117.1 165 52.7
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 2.0e-24 116.7 180 49.4
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 5.9e-24 115.2 185 47.0
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 7.8e-24 114.8 180 52.8
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 7.8e-24 114.8 185 46.5
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 1.0e-23 114.4 187 46.5
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 1.0e-23 114.4 179 46.9
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 1.3e-23 114.0 183 49.2
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 2.3e-23 113.2 183 50.3
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 3.8e-23 112.5 178 50.6
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 5.0e-23 112.1 178 52.2
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 6.6e-23 111.7 173 49.1
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 6.6e-23 111.7 182 47.8
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 8.6e-23 111.3 183 49.7
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 1.1e-22 110.9 179 50.3
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 1.1e-22 110.9 177 48.0
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 1.5e-22 110.5 168 51.2
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 1.5e-22 110.5 176 48.9
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 1.9e-22 110.2 182 48.9
PGSC0003DMG400024540 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.9e-22 110.2 166 43.4
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 2.5e-22 109.8 187 44.4
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 2.5e-22 109.8 164 51.2
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 7.3e-22 108.2 169 50.9
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 7.3e-22 108.2 179 46.9
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 1.6e-21 107.1 169 52.1
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 2.1e-21 106.7 183 40.4
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 2.8e-21 106.3 183 50.8
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 8.0e-21 104.8 184 39.7
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 8.0e-21 104.8 184 39.7
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 8.0e-21 104.8 170 47.6
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 1.0e-20 104.4 180 38.3
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 1.8e-20 103.6 183 46.4
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 2.3e-20 103.2 181 48.6
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 4.0e-20 102.4 183 45.4
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 5.2e-20 102.1 182 45.6
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 1.2e-19 100.9 183 44.8
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 5.7e-19 98.6 167 47.3
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 9.8e-19 97.8 221 37.6
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.7e-18 97.1 183 44.8
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.7e-18 97.1 183 44.8
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 1.7e-18 97.1 168 47.6
RcHm_v2.0_Chr2g0129321 Rosa chinensis HOM05D004083 ORTHO05D005029 2.2e-18 96.7 62 66.1
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 2.2e-18 96.7 178 45.5
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 6.4e-18 95.1 164 50.6
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.1e-17 94.4 182 47.3
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 1.8e-17 93.6 178 44.4
RcHm_v2.0_Chr2g0129311 Rosa chinensis HOM05D004083 ORTHO05D005029 1.8e-17 93.6 101 70.3
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 3.2e-17 92.8 218 36.7
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 7.0e-17 91.7 180 33.9
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 1.2e-16 90.9 193 36.8
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 1.6e-16 90.5 190 45.3
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 2.3e-15 86.7 181 33.1
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 8.6e-15 84.7 183 43.7
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 4.3e-14 82.4 188 38.3
Nitab4.5_0001485g0130 Nicotiana tabacum HOM05D004083 ORTHO05D005029 3.1e-12 76.3 172 45.9
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 1.5e-11 73.9 150 48.0
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 2.0e-11 73.6 151 48.3
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 4.4e-11 72.4 198 32.8
PRCOL_00006068 Prasinoderma coloniale HOM05D004083 ORTHO05D005029 3.7e-10 69.3 198 38.9
Actinidia05940 Actinidia chinensis HOM05D004083 ORTHO05D005029 6.4e-10 68.6 83 43.4
MCO13G099 Micromonas commoda HOM05D004083 ORTHO05D005029 1.1e-09 67.8 185 27.6
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 4.1e-09 65.9 81 44.4
Cre05.g240650 Chlamydomonas reinhardtii HOM05D004083 ORTHO05D005029 2.7e-08 63.2 183 40.4
unitig_748.g8703 Utricularia gibba HOM05D004083 ORTHO05D005029 1.3e-07 60.8 171 36.8
CBR_g1010 Chara braunii HOM05D002285 ORTHO05D004192 3.9e-07 59.3 87 42.5
AUR62018932 Chenopodium quinoa HOM05D002285 ORTHO05D004192 3.9e-07 59.3 93 40.9
AUR62027776 Chenopodium quinoa HOM05D002285 ORTHO05D004192 3.9e-07 59.3 93 40.9
Mapoly0114s0007 Marchantia polymorpha HOM05D002285 ORTHO05D004192 5.0e-07 58.9 93 39.8
SGA_v2.0_scaffold19G08809 Striga asiatica HOM05D002285 ORTHO05D004192 6.6e-07 58.5 86 38.4
Zm00001eb085940 Zea mays HOM05D002285 ORTHO05D004192 6.6e-07 58.5 85 41.2
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 8.6e-07 58.2 69 42.0
CAN.G134.32 Capsicum annuum HOM05D002285 ORTHO05D004192 1.1e-06 57.8 85 38.8
Sopen01g040410 Solanum pennellii HOM05D002285 ORTHO05D004192 1.1e-06 57.8 85 40.0
PGSC0003DMG400003295 Solanum tuberosum HOM05D002285 ORTHO05D004192 1.1e-06 57.8 85 40.0
Zm00001eb085870 Zea mays HOM05D002285 ORTHO05D004192 1.1e-06 57.8 85 41.2
Aqoxy2G00069 Aquilegia oxysepala HOM05D002285 ORTHO05D004192 1.5e-06 57.4 86 38.4
SMO367G0595 Selaginella moellendorffii HOM05D002285 ORTHO05D004192 1.9e-06 57.0 86 37.2
COL.COLO4_32862 Corchorus olitorius HOM05D002285 ORTHO05D004192 2.5e-06 56.6 86 38.4
HanXRQChr07g0198621 Helianthus annuus HOM05D002285 ORTHO05D004192 2.5e-06 56.6 85 37.6
PSO541G2672 Papaver somniferum HOM05D002285 ORTHO05D004192 2.5e-06 56.6 84 41.7
PSO541G2777 Papaver somniferum HOM05D002285 ORTHO05D004192 2.5e-06 56.6 84 40.5
PSO675G2493 Papaver somniferum HOM05D002285 ORTHO05D004192 2.5e-06 56.6 84 40.5
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 3.3e-06 56.2 61 49.2
Ah.09g228410 Amaranthus hybridus HOM05D002285 ORTHO05D004192 4.3e-06 55.8 86 37.2
Ciclev10011261m.g Citrus clementina HOM05D002285 ORTHO05D004192 4.3e-06 55.8 86 37.2
Lalb_Chr15g0090711 Lupinus albus HOM05D002285 ORTHO05D004192 4.3e-06 55.8 86 37.2
TWI12G1289 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 4.3e-06 55.8 91 37.4
arahy.Tifrunner.gnm1.ann1.2HCW1A Arachis hypogaea HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 37.2
arahy.Tifrunner.gnm1.ann1.IXY6UZ Arachis hypogaea HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 37.2
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 38.4
EL10Ac1g01199 Beta vulgaris HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 38.4
Dinv04986 Davidia involucrata HOM05D002285 ORTHO05D004192 5.6e-06 55.5 92 35.9
Duzib114G1054 Durio zibethinus HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 37.2
ECA240G2921 Erigeron canadensis HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 34.9
Gorai.010G212600 Gossypium raimondii HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 37.2
Lj9P652T21 Lonicera japonica HOM05D002285 ORTHO05D004192 5.6e-06 55.5 86 38.4
Lalb_Chr20g0123651 Lupinus albus HOM05D002285 ORTHO05D004192 5.6e-06 55.5 85 35.3
Nitab4.5_0007610g0020 Nicotiana tabacum HOM05D002285 ORTHO05D004192 5.6e-06 55.5 85 38.8
vmacro09396 Vaccinium macrocarpon HOM05D002285 ORTHO05D004192 5.6e-06 55.5 85 37.6
Ah.14g085290 Amaranthus hybridus HOM05D002285 ORTHO05D004192 7.3e-06 55.1 93 39.8
Ca_15481_v3 Cicer arietinum L. HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
Cc07_g11350 Coffea canephora HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 36.0
Glyma.08G188900 Glycine max HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
Glyma.12G168800 Glycine max HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
QL06p001430 Quercus lobata HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
Rhsim04G0038900 Rhododendron simsii HOM05D002285 ORTHO05D004192 7.3e-06 55.1 85 36.5
SGA_v2.0_scaffold25G10982 Striga asiatica HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
VMungo0540G1611 Vigna mungo HOM05D002285 ORTHO05D004192 7.3e-06 55.1 86 37.2
Lsat_1_v5_gn_6_76300 Lactuca sativa HOM05D002285 ORTHO05D004192 9.5e-06 54.7 86 37.2


User provided reference genes

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