Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-164 583.2 299 100.0
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.1e-141 506.9 292 88.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 9.2e-138 493.8 315 81.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.1e-136 488.0 315 80.6
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.2e-129 466.8 281 83.6
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 2.5e-127 459.1 290 82.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 2.4e-117 426.0 291 74.9
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-114 417.2 288 74.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-114 417.2 288 74.3
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.9e-114 416.4 275 76.4
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 3.2e-114 415.6 287 74.2
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 3.2e-114 415.6 287 74.6
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 7.9e-113 411.0 286 74.8
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.0e-112 409.1 274 72.6
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 8.7e-112 407.5 289 72.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 8.7e-112 407.5 268 74.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 8.7e-112 407.5 286 73.4
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.1e-111 407.1 268 76.1
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.1e-111 407.1 286 72.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.5e-111 406.8 279 72.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.3e-111 405.6 278 72.3
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.3e-111 405.6 271 72.7
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.3e-111 405.6 267 75.3
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 5.6e-111 404.8 289 70.9
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 9.6e-111 404.1 268 76.1
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 9.6e-111 404.1 269 74.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.3e-110 403.7 271 72.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.6e-110 403.3 284 71.8
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.6e-110 403.3 291 71.1
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.8e-110 402.5 305 68.9
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.8e-110 401.7 269 74.3
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.2e-110 401.4 280 71.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 6.2e-110 401.4 267 74.9
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 6.2e-110 401.4 269 73.6
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 6.2e-110 401.4 272 73.2
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 8.1e-110 401.0 260 75.8
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 8.1e-110 401.0 272 73.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.1e-109 400.6 269 74.3
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.4e-109 400.2 273 71.4
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.8e-109 399.8 274 73.0
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.4e-109 399.4 267 73.0
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 4.0e-109 398.7 276 70.7
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 5.3e-109 398.3 277 74.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 5.3e-109 398.3 282 72.0
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.2e-108 397.1 273 71.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.0e-108 396.4 260 75.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.6e-108 396.0 281 71.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.6e-108 396.0 276 71.4
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.3e-107 393.7 273 71.1
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.2e-107 392.9 292 69.5
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.9e-107 391.7 296 67.9
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 6.4e-107 391.3 274 71.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.9e-106 389.8 296 68.2
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 3.2e-106 389.0 271 71.6
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.2e-106 389.0 300 67.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.2e-106 388.7 292 67.5
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 5.5e-106 388.3 281 68.0
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 5.5e-106 388.3 275 70.2
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 9.3e-106 387.5 273 70.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.2e-105 387.1 265 71.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.1e-105 386.3 254 79.1
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.7e-105 386.0 270 70.4
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.0e-104 384.0 259 72.6
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-104 383.6 231 80.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.3e-104 383.6 269 71.7
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 5.1e-104 381.7 291 69.4
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 5.1e-104 381.7 248 72.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.1e-103 380.6 266 69.2
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.9e-103 379.8 259 72.2
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 4.3e-103 378.6 275 70.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 4.3e-103 378.6 275 70.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 5.6e-103 378.3 276 69.9
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 5.6e-103 378.3 253 72.7
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 9.6e-103 377.5 294 66.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 9.6e-103 377.5 283 68.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.3e-102 377.1 273 67.8
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.3e-102 377.1 273 67.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.6e-102 376.7 260 71.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 3.7e-102 375.6 273 69.6
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.8e-102 375.2 235 76.6
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 6.2e-102 374.8 239 75.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.1e-101 372.5 332 60.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-100 370.5 246 72.0
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 3.4e-100 369.0 287 65.9
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 4.5e-100 368.6 289 63.3
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 5.8e-100 368.2 231 76.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-99 366.7 284 66.2
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.7e-99 366.7 316 59.8
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.8e-99 365.5 385 53.2
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-98 364.0 260 66.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.9e-98 363.2 266 67.3
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 7.1e-98 361.3 339 57.8
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.6e-97 360.1 231 76.2
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.9e-96 355.5 283 61.8
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 8.2e-94 347.8 262 67.2
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.4e-93 346.3 274 65.0
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.1e-90 337.4 257 63.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-88 329.7 238 69.7
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.9e-87 326.6 294 61.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.2e-86 323.2 193 90.2
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.1e-85 320.9 260 61.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 6.9e-85 318.2 298 54.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 5.9e-84 315.1 194 77.3
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.6e-73 280.4 197 67.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.7e-73 279.6 205 70.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 6.7e-72 275.0 199 69.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.7e-71 271.9 215 70.7
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.8e-69 266.9 204 66.7
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 6.1e-65 251.9 215 61.4
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-62 243.4 159 75.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 4.8e-62 242.3 192 68.8
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 4.5e-60 235.7 182 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 4.0e-56 222.6 221 52.5
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 5.2e-56 222.2 171 67.8
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 5.7e-55 218.8 171 66.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 6.6e-51 205.3 130 76.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.6e-49 200.7 228 50.9
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 5.2e-48 195.7 127 67.7
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-46 190.7 157 66.2
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-46 190.3 163 65.6
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-45 188.0 183 59.6
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-45 187.6 157 65.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 5.4e-45 185.7 173 60.1
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-44 183.7 157 64.3
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-44 183.0 157 65.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-43 178.7 172 59.9
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 8.6e-43 178.3 158 62.7
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 5.2e-40 169.1 108 77.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-39 167.9 177 58.8
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-37 161.4 157 59.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 5.4e-37 159.1 146 61.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.5e-34 150.2 104 71.2
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 7.3e-34 148.7 97 78.4
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-34 148.3 160 55.0
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-34 148.3 160 55.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-33 146.4 94 79.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-33 145.2 123 64.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-32 144.4 122 63.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.4e-32 144.4 323 34.7
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.4e-32 144.4 105 68.6
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.7e-30 136.3 88 67.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.9e-26 124.0 75 76.0
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-25 119.8 109 61.5
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-24 117.9 184 46.2
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-20 103.6 70 77.1
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-19 101.7 133 47.4
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.1e-16 90.1 57 77.2
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-16 89.7 89 58.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.2e-16 89.4 96 53.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.9e-16 88.6 55 76.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 6.2e-09 65.9 111 38.7
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.7e-06 57.8 43 65.1
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.9e-06 57.0 38 68.4
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 4.9e-06 56.2 47 61.7


User provided reference genes

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