Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0199571 Rosa chinensis HOM05D000842 ORTHO05D000650 1.8e-16 88.2 45 100.0
FvH4_6g33160 Fragaria vesca HOM05D000842 ORTHO05D000650 2.5e-10 67.8 34 94.1
FAN14G1725 Fragaria x ananassa HOM05D000842 ORTHO05D000650 2.5e-10 67.8 34 94.1
FAN09G1652 Fragaria x ananassa HOM05D000842 ORTHO05D000650 7.1e-10 66.2 34 91.2
RcHm_v2.0_Chr2g0146461 Rosa chinensis HOM05D000842 ORTHO05D000650 7.1e-10 66.2 34 94.1
RcHm_v2.0_Chr2g0142861 Rosa chinensis HOM05D000842 ORTHO05D000650 9.3e-10 65.9 34 94.1
FAN02G3656 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.6e-09 65.1 34 88.2
FAN05G2951 Fragaria x ananassa HOM05D000842 ORTHO05D000650 4.6e-09 63.5 34 88.2
Prupe.3G051000 Prunus persica HOM05D000842 ORTHO05D000650 6.1e-09 63.2 34 88.2
Thecc.06G109500 Theobroma cacao HOM05D000842 ORTHO05D000650 1.0e-08 62.4 36 83.3
MD17G1175100 Malus domestica HOM05D000842 ORTHO05D000650 1.8e-08 61.6 34 85.3
arahy.Tifrunner.gnm1.ann1.GZNN80 Arachis hypogaea HOM05D000842 ORTHO05D000650 2.3e-08 61.2 36 83.3
Dinv30387 Davidia involucrata HOM05D000842 ORTHO05D000650 2.3e-08 61.2 34 85.3
CSS0002312 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 3.0e-08 60.8 36 80.6
CSS0040988 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 3.0e-08 60.8 36 80.6
CANSAT64G1462 Cannabis sativa HOM05D000842 ORTHO05D000650 3.0e-08 60.8 34 85.3
Ciclev10026255m.g Citrus clementina HOM05D000842 ORTHO05D000650 3.0e-08 60.8 36 80.6
Dinv37922 Davidia involucrata HOM05D000842 ORTHO05D000650 3.0e-08 60.8 36 80.6
arahy.Tifrunner.gnm1.ann1.22LF0C Arachis hypogaea HOM05D000842 ORTHO05D000650 3.9e-08 60.5 36 80.6
Actinidia09026 Actinidia chinensis HOM05D000842 ORTHO05D000650 5.1e-08 60.1 34 85.3
CSS0009776 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 6.7e-08 59.7 36 80.6
GSVIVG01016844001 Vitis vinifera HOM05D000842 ORTHO05D000650 6.7e-08 59.7 34 85.3
C06p15820 Brassica napus HOM05D000842 ORTHO05D000650 8.7e-08 59.3 33 84.8
BolC6t36774H Brassica oleracea HOM05D000842 ORTHO05D000650 8.7e-08 59.3 34 82.4
COL.COLO4_30649 Corchorus olitorius HOM05D000842 ORTHO05D000650 8.7e-08 59.3 36 80.6
Gohir.A02G115500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.7e-08 59.3 36 77.8
Gohir.A10G060900 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.7e-08 59.3 35 82.9
QL05p014694 Quercus lobata HOM05D000842 ORTHO05D000650 8.7e-08 59.3 36 77.8
BcaB02g10841 Brassica carinata HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
Cpa.g.sc25.65 Carica papaya HOM05D000842 ORTHO05D000650 1.1e-07 58.9 39 74.4
Ca_01191_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
Gohir.D03G056500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
Gorai.003G059600 Gossypium raimondii HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
Medtr2g100240 Medicago truncatula HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
Psat5g293360 Pisum sativum HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
TPR.G6562 Trifolium pratense HOM05D000842 ORTHO05D000650 1.1e-07 58.9 36 77.8
TAR383G0631 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.5e-07 58.5 34 82.4
EL10Ac7g15775 Beta vulgaris HOM05D000842 ORTHO05D000650 2.5e-07 57.8 34 76.5
Gohir.D10G062000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 2.5e-07 57.8 35 80.0
Gorai.011G066200 Gossypium raimondii HOM05D000842 ORTHO05D000650 2.5e-07 57.8 35 80.0
Lj5C46T6 Lonicera japonica HOM05D000842 ORTHO05D000650 2.5e-07 57.8 34 82.4
BcaB07g33230 Brassica carinata HOM05D000842 ORTHO05D000650 3.3e-07 57.4 37 75.7
Actinidia39116 Actinidia chinensis HOM05D000842 ORTHO05D000650 4.3e-07 57.0 34 82.4
BcaC08g43611 Brassica carinata HOM05D000842 ORTHO05D000650 4.3e-07 57.0 37 75.7
A06p00370 Brassica napus HOM05D000842 ORTHO05D000650 4.3e-07 57.0 37 75.7
C06p10130 Brassica napus HOM05D000842 ORTHO05D000650 4.3e-07 57.0 37 75.7
BraA06t23252Z Brassica rapa HOM05D000842 ORTHO05D000650 4.3e-07 57.0 37 75.7
Cc04_g02040 Coffea canephora HOM05D000842 ORTHO05D000650 4.3e-07 57.0 39 71.8
Hma1.2p1_0388F.1_g142260 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 4.3e-07 57.0 36 77.8
Lalb_Chr22g0351761 Lupinus albus HOM05D000842 ORTHO05D000650 4.3e-07 57.0 36 77.8
Rhsim12G0205300 Rhododendron simsii HOM05D000842 ORTHO05D000650 4.3e-07 57.0 34 82.4
Aa31LG10G960 Aethionema arabicum HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
Aqoxy7G04070 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 5.7e-07 56.6 36 72.2
AL1G63210 Arabidopsis lyrata HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
AT1G55170 Arabidopsis thaliana HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
Carub.0001s4367 Capsella rubella HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
CARHR044790 Cardamine hirsuta HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
CiPaw.02G141000 Carya illinoinensis HOM05D000842 ORTHO05D000650 5.7e-07 56.6 36 72.2
Thhalv10011750m.g Eutrema salsugineum HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
MBI13_g00889_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 5.7e-07 56.6 37 70.3
Nn2g14738 Nelumbo nucifera HOM05D000842 ORTHO05D000650 5.7e-07 56.6 37 73.0
Phvul.005G160200 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 82.4
Sp1g40840 Schrenkiella parvula HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 79.4
vmacro16990 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 5.7e-07 56.6 35 85.7
vmacro22857 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 5.7e-07 56.6 35 85.7
VMungo1080G1632 Vigna mungo HOM05D000842 ORTHO05D000650 5.7e-07 56.6 34 82.4
Haze_15940 Corylus avellana HOM05D000842 ORTHO05D000650 7.4e-07 56.2 36 75.0
Hma1.2p1_0516F.1_g170560 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 9.7e-07 55.8 34 76.5
TAR624G1368 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.3e-06 55.5 34 76.5
CDE08G1357 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.6e-06 55.1 37 73.0
Eucgr.J02870 Eucalyptus grandis HOM05D000842 ORTHO05D000650 1.6e-06 55.1 34 82.4
Glyma.15G023600 Glycine max HOM05D000842 ORTHO05D000650 1.6e-06 55.1 34 79.4
Peaxi162Scf00038g01435 Petunia axillaris HOM05D000842 ORTHO05D000650 1.6e-06 55.1 34 79.4
HPP92_014257 Vanilla planifolia HOM05D000842 ORTHO05D000650 1.6e-06 55.1 37 73.0
Hma1.2p1_1116F.1_g258940 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 2.2e-06 54.7 34 76.5
Lj3g0025148 Lotus japonicus HOM05D000842 ORTHO05D000650 2.2e-06 54.7 37 70.3
Sc12g0010200 Simmondsia chinensis HOM05D000842 ORTHO05D000650 2.2e-06 54.7 36 72.2
A05p17650 Brassica napus HOM05D000842 ORTHO05D000650 2.8e-06 54.3 32 78.1
BraA05t20657Z Brassica rapa HOM05D000842 ORTHO05D000650 2.8e-06 54.3 32 78.1
Lalb_Chr14g0372831 Lupinus albus HOM05D000842 ORTHO05D000650 2.8e-06 54.3 34 79.4
AUR62009811 Chenopodium quinoa HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 70.6
AUR62038123 Chenopodium quinoa HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 70.6
DCAR_007618 Daucus carota HOM05D000842 ORTHO05D000650 3.7e-06 53.9 37 70.3
Nitab4.5_0004364g0040 Nicotiana tabacum HOM05D000250 ORTHO05D000650 3.7e-06 53.9 34 79.4
Nitab4.5_0005281g0020 Nicotiana tabacum HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 79.4
Solyc03g121500.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 76.5
Sopen03g040310 Solanum pennellii HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 76.5
PGSC0003DMG400002502 Solanum tuberosum HOM05D000842 ORTHO05D000650 3.7e-06 53.9 34 76.5
Glyma.01G128750 Glycine max HOM05D000842 ORTHO05D000650 4.8e-06 53.5 34 76.5
Glyma.13G350800 Glycine max HOM05D000842 ORTHO05D000650 4.8e-06 53.5 34 76.5
Ah.15g095600 Amaranthus hybridus HOM05D000842 ORTHO05D000650 8.2e-06 52.8 36 66.7
CAN.G1389.8 Capsicum annuum HOM05D000842 ORTHO05D000650 8.2e-06 52.8 34 70.6
TAR626G0918 Trochodendron aralioides HOM05D000842 ORTHO05D000650 8.2e-06 52.8 34 76.5


User provided reference genes

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