Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 2.7e-177 625.9 510 100.0
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 4.0e-141 505.8 510 82.9
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.0e-141 505.8 510 82.9
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 8.9e-141 504.6 510 84.7
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.4e-140 502.3 510 81.0
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.6e-137 492.3 510 82.0
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 4.0e-109 399.4 508 72.0
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 6.4e-107 392.1 509 70.9
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 3.9e-104 382.9 517 72.3
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.5e-99 365.5 517 55.7
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 5.5e-98 362.5 518 67.8
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 6.7e-96 355.5 510 45.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 9.0e-93 345.1 513 43.5
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.0e-92 344.0 511 42.9
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.6e-92 343.6 527 58.8
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.4e-92 343.2 509 45.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 4.5e-92 342.8 505 43.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 2.2e-91 340.5 511 42.3
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 5.0e-91 339.3 483 45.1
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.1e-90 338.2 509 58.7
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.1e-90 338.2 509 44.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.9e-90 337.4 511 44.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 1.9e-90 337.4 516 42.4
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.5e-90 337.0 509 63.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.7e-89 333.6 518 58.9
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 2.7e-89 333.6 510 45.9
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.4e-88 331.3 512 63.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.8e-88 328.6 511 42.3
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.3e-86 324.7 508 42.1
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.7e-86 324.3 524 67.6
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.2e-86 323.9 509 41.7
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 2.8e-86 323.6 484 43.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.8e-86 322.8 496 41.9
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.1e-85 320.1 507 40.8
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.9e-85 318.9 509 63.7
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 6.9e-85 318.9 510 58.6
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.2e-84 318.2 510 63.9
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.0e-84 317.4 509 61.1
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 3.4e-84 316.6 550 39.8
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.3e-83 314.7 489 61.6
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.2e-83 313.9 506 40.9
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 8.5e-83 312.0 512 42.0
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.4e-82 311.2 509 60.3
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 2.5e-82 310.5 509 41.7
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 4.2e-82 309.7 512 41.0
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 4.2e-82 309.7 513 51.9
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 7.2e-82 308.9 519 52.0
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 2.1e-81 307.4 515 59.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 2.7e-81 307.0 483 64.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.7e-81 307.0 515 42.9
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.7e-81 306.2 519 48.7
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 6.1e-81 305.8 512 41.6
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-80 304.7 509 59.3
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 2.8e-78 297.0 531 62.3
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 4.8e-78 296.2 520 45.4
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.8e-77 294.3 508 66.9
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.2e-76 291.6 512 42.8
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.2e-76 291.6 496 40.3
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.5e-76 291.2 510 40.0
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 5.9e-76 289.3 508 41.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 7.7e-76 288.9 512 40.0
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.9e-75 287.0 513 59.8
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 6.5e-75 285.8 479 50.5
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 1.9e-74 284.3 512 42.8
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.6e-73 281.2 445 40.4
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 4.7e-73 279.6 484 41.5
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 6.1e-73 279.3 483 40.4
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 3.0e-72 276.9 509 39.1
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 3.0e-72 276.9 496 38.9
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 9.7e-71 271.9 518 40.3
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 8.2e-70 268.9 494 46.6
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.4e-69 268.1 494 37.7
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 2.6e-68 263.8 468 38.5
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 3.5e-68 263.5 446 38.6
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 7.7e-68 262.3 519 37.6
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.3e-67 261.5 516 47.3
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.7e-67 261.2 512 45.1
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 3.8e-67 260.0 438 41.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 6.5e-67 259.2 507 44.6
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 6.5e-67 259.2 507 37.1
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 9.4e-66 255.4 509 45.4
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 1.2e-65 255.0 535 46.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 2.1e-65 254.2 464 43.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 6.1e-65 252.7 509 40.9
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 6.1e-65 252.7 509 40.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 1.8e-64 251.1 527 43.1
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 3.0e-64 250.4 509 52.5
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 4.0e-64 250.0 507 46.0
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.7e-64 249.2 556 47.5
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 4.4e-63 246.5 507 45.4
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 1.3e-62 245.0 509 46.6
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.1e-61 241.9 170 74.1
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 9.1e-61 238.8 507 52.3
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.2e-60 238.4 527 45.4
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 7.7e-60 235.7 509 42.2
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 7.7e-60 235.7 522 41.8
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-59 235.0 170 73.5
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 2.2e-59 234.2 508 43.1
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 2.9e-59 233.8 509 48.1
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 7.2e-58 229.2 516 32.9
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 6.8e-56 222.6 507 48.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 1.2e-55 221.9 569 52.7
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 3.4e-55 220.3 564 52.5
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 5.7e-55 219.5 502 36.3
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 7.5e-55 219.2 514 37.7
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.3e-54 218.4 548 47.1
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.3e-54 218.4 548 47.1
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.8e-54 217.2 509 46.6
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.8e-54 216.5 509 49.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 8.3e-54 215.7 498 31.3
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.8e-53 214.5 485 33.6
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 3.1e-53 213.8 142 78.2
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 1.3e-51 208.4 488 33.8
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 2.9e-51 207.2 535 44.5
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.5e-50 204.1 442 40.5
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.6e-49 200.3 148 70.3
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 3.0e-48 197.2 510 32.0
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.7e-44 184.1 127 72.4
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 1.6e-41 174.9 444 37.4
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 4.4e-39 166.8 175 55.4
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 7.5e-39 166.0 191 52.9
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 2.4e-37 161.0 193 48.7
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 2.0e-36 157.9 488 34.8
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.6e-33 147.1 113 69.0
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.5e-26 125.2 473 29.4
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 5.2e-24 116.7 528 32.6
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 9.2e-21 105.9 104 49.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 4.6e-20 103.6 165 43.0
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.3e-19 102.1 74 63.5
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.6e-17 95.1 76 55.3
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 4.9e-14 83.6 110 41.8
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 5.4e-13 80.1 85 51.8
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 3.5e-12 77.4 52 57.7
PRCOL_00001099 Prasinoderma coloniale HOM05D005805 ORTHO05D007226 3.4e-07 60.8 134 30.6


User provided reference genes

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