Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 2.9e-125 451.8 217 100.0
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 4.7e-99 364.8 197 87.3
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 4.7e-99 364.8 197 87.3
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 6.8e-98 360.9 197 86.3
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 5.9e-94 347.8 190 86.8
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.5e-92 343.2 190 87.4
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 4.3e-76 288.5 223 63.7
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 1.3e-72 276.9 209 67.5
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 6.9e-58 228.0 182 62.1
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 8.9e-58 227.6 189 64.0
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 1.3e-56 223.8 189 62.4
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 9.3e-55 217.6 186 59.7
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 1.6e-54 216.9 208 56.2
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 1.6e-54 216.9 203 58.1
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 1.0e-53 214.2 204 57.4
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 5.1e-53 211.8 189 59.3
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 6.6e-53 211.5 191 57.6
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 1.1e-52 210.7 187 59.4
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 1.1e-52 210.7 180 60.0
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.1e-50 204.1 191 57.1
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 1.4e-50 203.8 180 61.7
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 2.4e-50 203.0 176 60.2
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 5.3e-50 201.8 188 57.4
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 5.3e-50 201.8 180 57.8
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 4.5e-49 198.7 214 51.9
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.3e-48 197.2 216 50.5
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 3.8e-48 195.7 180 56.7
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 3.2e-47 192.6 194 55.7
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 1.5e-44 183.7 183 53.0
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 9.6e-44 181.0 217 46.5
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 1.8e-42 176.8 197 50.8
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 3.8e-40 169.1 192 51.0
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 1.4e-39 167.2 188 48.9
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 7.1e-39 164.9 154 55.8
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 4.6e-38 162.2 195 49.2
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 1.8e-37 160.2 190 51.6
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 1.1e-36 157.5 149 54.4
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 1.9e-36 156.8 209 44.5
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 1.6e-35 153.7 201 44.8
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 1.7e-32 143.7 119 58.0
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.7e-32 143.7 120 56.7
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 2.1e-30 136.7 176 46.0
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 2.1e-30 136.7 183 43.7
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 3.9e-29 132.5 195 41.5
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 6.7e-29 131.7 151 45.7
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 3.7e-27 125.9 179 40.8
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 4.8e-27 125.6 150 44.0
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 1.4e-26 124.0 184 42.9
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.5e-25 120.6 145 46.9
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 4.5e-25 119.0 164 41.5
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 7.6e-25 118.2 157 45.2
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 2.9e-24 116.3 181 44.8
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 5.0e-24 115.5 174 40.2
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 6.5e-24 115.2 194 36.6
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 2.5e-23 113.2 183 43.7
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 6.1e-22 108.6 177 36.7
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 5.1e-21 105.5 199 37.7
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 2.5e-20 103.2 182 36.3
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 4.1e-18 95.9 150 38.7
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 6.9e-18 95.1 150 38.0
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 1.5e-17 94.0 165 41.8
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 5.9e-17 92.0 150 37.3
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 3.2e-15 86.3 177 34.5
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 5.5e-15 85.5 70 62.9
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 1.6e-14 84.0 85 51.8
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 3.0e-13 79.7 59 66.1
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 4.4e-12 75.9 145 33.8
Peaxi162Scf00021g00112 Petunia axillaris HOM05D002113 ORTHO05D002124 1.3e-11 74.3 198 27.8
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 4.8e-11 72.4 86 48.8
Peaxi162Scf00233g00082 Petunia axillaris HOM05D002113 ORTHO05D002124 6.3e-11 72.0 150 30.0
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 2.4e-10 70.1 78 47.4
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 4.5e-09 65.9 145 32.4
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 5.9e-09 65.5 78 47.4
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 1.7e-08 63.9 145 30.3
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 2.9e-08 63.2 146 34.2
Lalb_Chr15g0083531 Lupinus albus HOM05D000865 ORTHO05D000739 2.9e-08 63.2 143 28.7
CAN.G170.16 Capsicum annuum HOM05D002113 ORTHO05D002124 5.0e-08 62.4 151 27.2
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 6.5e-08 62.0 147 29.3
Oeu004922.1 Olea europaea HOM05D001109 ORTHO05D001051 8.5e-08 61.6 146 30.1
Aqoxy4G02273 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 1.1e-07 61.2 202 28.7
Glyma.07G076100 Glycine max HOM05D002113 ORTHO05D002124 1.1e-07 61.2 181 29.8
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 1.1e-07 61.2 149 31.5
Medtr8g432390 Medicago truncatula HOM05D002113 ORTHO05D002124 1.4e-07 60.8 193 31.1
COL.COLO4_12607 Corchorus olitorius HOM05D002113 ORTHO05D002124 2.5e-07 60.1 153 26.8
ECA240G0265 Erigeron canadensis HOM05D002113 ORTHO05D002124 2.5e-07 60.1 152 28.3
Os06g0128800 Oryza sativa ssp. japonica HOM05D041313 ORTHO05D010232 2.5e-07 60.1 168 28.6
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 2.5e-07 60.1 182 29.7
unitig_8.g3340 Utricularia gibba HOM05D001109 ORTHO05D001051 2.5e-07 60.1 156 26.3
Lalb_Chr18g0051731 Lupinus albus HOM05D000865 ORTHO05D000739 4.2e-07 59.3 147 25.9
Medtr8g432350 Medicago truncatula HOM05D002113 ORTHO05D002124 4.2e-07 59.3 193 30.1
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 4.2e-07 59.3 152 28.3
Gohir.A12G110100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 5.5e-07 58.9 163 27.0
Gorai.008G122700 Gossypium raimondii HOM05D001109 ORTHO05D001051 5.5e-07 58.9 163 27.0
Lalb_Chr10g0097351 Lupinus albus HOM05D002113 ORTHO05D002124 5.5e-07 58.9 178 27.5
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 5.5e-07 58.9 183 27.9
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 9.4e-07 58.2 185 28.6
Dinv43883 Davidia involucrata HOM05D003005 ORTHO05D004170 1.2e-06 57.8 150 31.3
TAR626G0001 Trochodendron aralioides HOM05D001109 ORTHO05D011777 1.2e-06 57.8 143 26.6
Phvul.002G004000 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 1.6e-06 57.4 179 28.5
SalBow5G1095 Salvia bowleyana HOM05D001109 ORTHO05D001051 1.6e-06 57.4 146 30.8
CSS0011580 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 2.7e-06 56.6 140 26.4
COL.COLO4_29200 Corchorus olitorius HOM05D001109 ORTHO05D001051 2.7e-06 56.6 102 34.3
QL09p014635 Quercus lobata HOM05D002113 ORTHO05D002124 2.7e-06 56.6 144 28.5
Sp5g02180 Schrenkiella parvula HOM05D002113 ORTHO05D002124 2.7e-06 56.6 178 28.7
Aqoxy7G00224 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 3.6e-06 56.2 157 28.0
CAN.G78.146 Capsicum annuum HOM05D001109 ORTHO05D001051 3.6e-06 56.2 144 27.8
Duzib138G0142 Durio zibethinus HOM05D001109 ORTHO05D001051 3.6e-06 56.2 167 30.5
FvH4_7g15700 Fragaria vesca HOM05D001109 ORTHO05D001051 3.6e-06 56.2 151 28.5
FAN01G2402 Fragaria x ananassa HOM05D001109 ORTHO05D001051 3.6e-06 56.2 151 28.5
FAN06G0693 Fragaria x ananassa HOM05D001109 ORTHO05D001051 3.6e-06 56.2 151 28.5
FAN06G2199 Fragaria x ananassa HOM05D001109 ORTHO05D001051 3.6e-06 56.2 151 28.5
FAN10G0645 Fragaria x ananassa HOM05D001109 ORTHO05D001051 3.6e-06 56.2 151 28.5
Eucgr.L01644 Eucalyptus grandis HOM05D002113 ORTHO05D002124 4.7e-06 55.8 189 28.0
FAN10G2442 Fragaria x ananassa HOM05D001109 ORTHO05D001051 4.7e-06 55.8 151 28.5
Lj2C45T9 Lonicera japonica HOM05D001109 ORTHO05D001051 4.7e-06 55.8 147 27.2
Phvul.006G109100 Phaseolus vulgaris HOM05D001109 ORTHO05D001051 4.7e-06 55.8 139 30.9
PGR042G3453 Punica granatum HOM05D002113 ORTHO05D002124 4.7e-06 55.8 157 31.2
ATR1131G044 Amborella trichopoda HOM05D001109 ORTHO05D001051 6.1e-06 55.5 147 26.5
CDE08G0587 Ceratophyllum demersum HOM05D001109 ORTHO05D001051 6.1e-06 55.5 203 26.1
Gohir.D12G113100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 6.1e-06 55.5 163 25.8
Medtr8g432370 Medicago truncatula HOM05D002113 ORTHO05D002124 6.1e-06 55.5 193 30.6
Aqoxy5G04035 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 7.9e-06 55.1 150 27.3
COL.COLO4_06359 Corchorus olitorius HOM05D001109 ORTHO05D001051 7.9e-06 55.1 89 36.0
MELO3C006047.2 Cucumis melo HOM05D001109 ORTHO05D001051 7.9e-06 55.1 174 27.6
FAN03G1135 Fragaria x ananassa HOM05D001109 ORTHO05D001051 7.9e-06 55.1 156 30.1


User provided reference genes

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