Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 2.0e-28 128.3 60 100.0
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 3.9e-11 70.9 29 100.0
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 3.9e-11 70.9 29 100.0
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 8.6e-11 69.7 29 96.6
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 1.9e-10 68.6 29 96.6
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 4.3e-10 67.4 29 96.6
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 4.0e-08 60.8 29 86.2
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 5.2e-08 60.5 29 86.2
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 5.2e-08 60.5 29 86.2
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 8.9e-08 59.7 29 86.2
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 1.2e-07 59.3 30 80.0
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 86.2
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 86.2
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 86.2
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 86.2
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 86.2
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 1.5e-07 58.9 29 82.8
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 2.0e-07 58.5 29 82.8
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 2.6e-07 58.2 52 59.6
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 3.4e-07 57.8 29 82.8
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 3.4e-07 57.8 29 79.3
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 3.4e-07 57.8 29 82.8
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 4.4e-07 57.4 29 79.3
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 5.8e-07 57.0 29 79.3
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 5.8e-07 57.0 28 85.7
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 7.6e-07 56.6 29 82.8
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 9.9e-07 56.2 28 78.6
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 82.8
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 79.3
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 9.9e-07 56.2 29 82.8
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 9.9e-07 56.2 40 70.0
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 79.3
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 79.3
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 79.3
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 79.3
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 75.9
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 29 75.9
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 28 82.1
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.3e-06 55.8 28 82.1
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 1.7e-06 55.5 29 79.3
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 72.4
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 79.3
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 82.8
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 79.3
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 75.9
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 75.9
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 75.9
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 72.4
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 2.2e-06 55.1 29 72.4
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.9e-06 54.7 29 75.9
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.9e-06 54.7 29 75.9
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 2.9e-06 54.7 40 65.0
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 2.9e-06 54.7 29 75.9
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 2.9e-06 54.7 29 75.9
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 2.9e-06 54.7 29 75.9
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 72.4
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 79.3
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 75.9
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 79.3
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 75.9
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 72.4
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 72.4
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 75.9
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 72.4
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 4.9e-06 53.9 29 72.4
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 6.4e-06 53.5 29 69.0
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 6.4e-06 53.5 29 75.9
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 6.4e-06 53.5 29 75.9
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.4e-06 53.1 29 72.4
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.4e-06 53.1 29 72.4
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.4e-06 53.1 53 50.9
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.4e-06 53.1 29 72.4
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 8.4e-06 53.1 29 72.4


User provided reference genes

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