Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 0.0e+00 1332.0 676 100.0
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 0.0e+00 1115.1 678 85.3
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 0.0e+00 1083.6 692 82.2
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 0.0e+00 1083.2 702 81.3
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 0.0e+00 1082.4 700 81.4
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 0.0e+00 1077.0 716 79.7
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.6e-312 1073.9 702 81.2
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 9.2e-311 1069.7 643 85.5
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 9.4e-239 830.5 677 65.4
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 8.0e-230 800.8 678 64.7
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 2.8e-219 765.8 574 70.4
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 1.9e-167 593.6 695 51.1
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 8.1e-158 561.6 718 49.3
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 2.4e-149 533.5 677 50.5
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 8.4e-147 525.0 687 45.7
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 1.1e-146 524.6 687 46.9
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 1.0e-139 501.5 687 45.7
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 9.4e-138 495.0 651 45.9
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 1.0e-136 491.5 704 45.9
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 8.8e-136 488.4 696 45.3
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 9.7e-135 485.0 678 44.2
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 1.3e-134 484.6 690 45.1
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 5.9e-132 475.7 624 45.4
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 2.9e-131 473.4 610 46.7
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 2.9e-131 473.4 610 46.7
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 1.2e-129 468.0 610 46.6
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 6.1e-129 465.7 664 45.8
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 1.4e-125 454.5 555 49.2
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 4.1e-125 453.0 691 43.0
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 1.2e-124 451.4 588 48.5
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.5e-124 451.1 666 44.4
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 2.6e-124 450.3 616 45.1
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 5.9e-124 449.1 602 46.0
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 2.5e-122 443.7 683 44.5
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 1.2e-121 441.4 630 45.2
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 3.6e-121 439.9 615 44.4
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 5.2e-120 436.0 692 41.8
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 3.3e-119 433.3 700 42.6
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 1.6e-116 424.5 629 42.6
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 1.6e-116 424.5 631 42.6
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 5.9e-116 422.5 629 42.6
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 2.2e-115 420.6 613 44.0
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 5.0e-115 419.5 632 43.5
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 1.1e-114 418.3 672 41.7
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 1.5e-114 417.9 672 41.5
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 1.4e-112 411.4 673 41.9
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 6.8e-112 409.1 702 40.2
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.5e-111 407.9 629 42.0
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 1.3e-110 404.8 579 44.6
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 9.1e-109 398.7 613 43.9
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 9.1e-109 398.7 679 40.9
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 1.6e-108 397.9 694 41.4
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 1.3e-107 394.8 630 41.7
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 6.5e-107 392.5 593 42.8
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 1.1e-106 391.7 622 41.6
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 1.5e-103 381.3 663 39.8
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 1.3e-102 378.3 597 41.4
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 1.1e-98 365.2 619 40.1
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 1.9e-98 364.4 600 38.7
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 1.6e-97 361.3 591 39.4
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 4.9e-94 349.7 718 37.6
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 1.4e-93 348.2 709 37.5
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 3.5e-92 343.6 778 36.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.8e-92 342.4 625 38.1
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 3.9e-91 340.1 629 39.0
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 7.3e-90 335.9 626 38.7
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 9.5e-90 335.5 648 37.2
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 2.3e-88 330.9 631 36.3
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.3e-86 325.1 445 44.9
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 1.7e-86 324.7 527 40.6
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 4.9e-86 323.2 626 37.9
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 1.2e-84 318.5 543 39.0
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 2.7e-84 317.4 587 38.8
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 6.0e-84 316.2 552 38.8
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.1e-82 312.0 447 43.0
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 7.5e-79 299.3 681 35.8
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.3e-78 298.5 443 41.3
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 6.4e-78 296.2 630 35.6
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.1e-77 292.7 736 33.7
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 1.0e-75 288.9 698 34.1
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 8.6e-75 285.8 577 35.7
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 6.8e-72 276.2 629 36.7
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 5.8e-71 273.1 625 35.8
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 1.9e-69 268.1 613 36.7
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 2.4e-69 267.7 614 35.5
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 1.2e-65 255.4 541 36.8
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 2.1e-65 254.6 600 35.0
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 3.1e-64 250.8 546 35.3
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 5.2e-64 250.0 476 38.0
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 9.9e-63 245.7 628 33.6
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 3.8e-62 243.8 487 36.6
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 3.8e-62 243.8 535 34.8
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 6.4e-62 243.0 593 34.1
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 4.2e-61 240.4 679 35.2
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 7.1e-61 239.6 565 35.4
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 9.3e-61 239.2 489 37.0
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 9.3e-61 239.2 427 40.0
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 1.2e-60 238.8 489 36.8
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 3.5e-60 237.3 490 37.1
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 3.5e-60 237.3 490 36.7
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 6.0e-60 236.5 489 36.8
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 1.1e-58 232.3 612 34.6
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 1.5e-58 231.9 542 36.2
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 1.5e-58 231.9 580 34.7
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 4.3e-58 230.3 593 36.1
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 1.3e-57 228.8 532 35.0
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 2.1e-57 228.0 615 34.8
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 3.6e-57 227.3 567 34.2
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 3.2e-53 214.2 674 30.9
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 5.4e-53 213.4 674 30.7
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 7.1e-53 213.0 679 30.9
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 3.1e-40 171.0 629 28.8
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 5.8e-39 166.8 235 43.4
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 3.8e-38 164.1 482 29.9
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.3e-35 155.6 440 32.0
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 6.5e-30 136.7 171 45.6
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 1.6e-28 132.1 279 34.8
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 3.7e-25 120.9 461 28.2
HPP92_023938 Vanilla planifolia HOM05D006267 ORTHO05D007490 7.7e-15 86.7 256 30.9
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.1e-13 82.8 133 40.6
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 6.7e-11 73.6 73 52.1
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 2.8e-09 68.2 526 23.6
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.2e-07 62.8 98 41.8
Zm00001eb203960 Zea mays HOM05D006267 ORTHO05D007490 2.9e-06 58.2 331 23.9
SEGI_39127 Sequoiadendron giganteum HOM05D006267 ORTHO05D007490 8.5e-06 56.6 252 24.6


User provided reference genes

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