Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 9.9e-181 637.5 571 100.0
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 9.1e-110 401.7 307 81.1
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.7e-109 400.2 307 80.8
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.8e-108 396.4 313 78.6
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.5e-107 394.4 313 78.9
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.5e-107 393.7 313 78.3
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.5e-99 367.1 313 74.8
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 2.3e-92 344.0 294 64.3
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 4.4e-88 329.7 294 63.6
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 3.0e-84 317.0 291 63.9
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 8.6e-84 315.5 295 62.7
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 1.2e-77 295.0 295 60.0
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 4.3e-75 286.6 294 56.8
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 7.3e-75 285.8 294 57.1
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.8e-73 281.2 294 54.8
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.4e-72 276.6 294 55.1
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.8e-72 276.2 294 55.1
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 3.7e-71 273.5 291 57.4
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 6.4e-71 272.7 294 53.4
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 1.9e-70 271.2 296 54.7
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.7e-69 267.3 296 55.7
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 5.6e-67 259.6 298 52.3
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 7.3e-67 259.2 290 53.4
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.7e-66 256.5 294 50.7
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 8.1e-66 255.8 294 50.3
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.1e-65 255.4 290 53.1
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 1.4e-65 255.0 298 54.0
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 1.2e-64 251.9 290 52.4
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 7.6e-64 249.2 295 51.9
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 7.6e-64 249.2 302 49.3
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.9e-64 248.8 294 49.7
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 2.2e-63 247.7 291 51.2
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 2.9e-63 247.3 294 50.3
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 3.7e-63 246.9 294 51.0
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 3.7e-63 246.9 294 50.3
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.1e-62 245.4 294 49.3
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.9e-62 244.6 295 49.8
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.4e-62 244.2 297 51.9
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 9.2e-62 242.3 295 50.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 3.9e-60 236.9 294 48.6
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 5.1e-60 236.5 298 49.7
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 1.1e-59 235.3 293 48.5
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.9e-59 234.6 298 50.3
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.9e-59 234.6 294 49.3
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.9e-59 234.6 289 51.2
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.8e-58 230.7 299 52.5
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 3.6e-58 230.3 290 49.0
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.8e-57 228.0 296 48.6
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 2.4e-57 227.6 296 50.3
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 4.0e-57 226.9 293 48.8
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 3.4e-56 223.8 290 48.6
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 4.4e-56 223.4 296 48.3
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 4.9e-55 219.9 296 48.3
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.9e-55 219.9 294 46.9
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.1e-54 218.8 296 48.3
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 4.2e-54 216.9 295 46.4
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.2e-54 216.9 294 45.9
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.2e-53 215.3 296 48.6
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.6e-53 214.9 294 46.3
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.3e-52 211.1 295 49.5
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 8.7e-52 209.1 297 48.8
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.5e-51 208.4 300 45.3
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 3.3e-51 207.2 293 44.7
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 3.3e-51 207.2 271 46.9
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 3.3e-51 207.2 294 43.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 5.6e-51 206.5 289 47.1
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.1e-50 204.5 299 46.2
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 6.2e-50 203.0 297 45.5
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 8.1e-50 202.6 297 48.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.3e-49 199.9 288 47.2
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.0e-48 198.0 296 43.6
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 4.5e-48 196.8 295 44.4
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.4e-46 191.8 303 43.9
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-45 188.0 296 44.9
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 3.5e-45 187.2 295 45.1
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.6e-45 186.8 294 41.2
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.3e-44 184.5 297 40.4
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.5e-43 181.0 295 44.4
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.3e-43 180.3 294 42.5
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 9.6e-43 179.1 298 47.0
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 2.1e-42 177.9 283 48.4
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 2.8e-42 177.6 139 69.8
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.4e-41 175.3 313 39.3
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 1.8e-41 174.9 298 43.0
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 4.0e-41 173.7 297 44.1
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 6.9e-41 172.9 298 45.0
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 9.0e-41 172.6 297 43.8
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 9.0e-41 172.6 303 40.6
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 2.6e-40 171.0 302 44.4
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 2.6e-40 171.0 302 44.4
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 3.4e-40 170.6 303 44.2
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 3.4e-40 170.6 297 43.8
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.3e-39 168.7 295 41.7
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.2e-39 167.9 299 43.1
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 2.9e-39 167.5 299 45.2
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 2.9e-39 167.5 296 40.5
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.9e-39 167.5 294 40.1
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.8e-39 167.2 295 41.4
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 6.4e-39 166.4 296 43.9
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 3.2e-38 164.1 294 38.4
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.2e-37 162.2 295 40.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 4.6e-37 160.2 296 39.9
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 7.9e-37 159.5 291 41.9
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 2.5e-35 154.5 303 39.6
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.3e-35 154.1 261 40.2
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 4.3e-35 153.7 296 37.2
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.6e-35 153.3 301 42.2
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.3e-34 152.1 277 41.9
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 2.1e-34 151.4 304 42.4
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 2.1e-34 151.4 295 38.6
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.1e-33 149.1 297 37.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.8e-33 148.3 258 41.9
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 3.4e-32 144.1 293 36.9
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 7.6e-32 142.9 303 41.3
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.9e-31 141.0 282 38.3
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 3.8e-31 140.6 296 39.2
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 6.5e-31 139.8 273 39.9
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 8.4e-31 139.4 294 38.1
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.1e-30 139.0 292 37.3
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 2.5e-30 137.9 260 39.2
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.5e-30 136.7 299 36.5
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.5e-30 136.7 299 36.5
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 5.5e-30 136.7 293 35.2
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 7.1e-30 136.3 297 38.0
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 1.2e-29 135.6 296 38.2
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 3.5e-29 134.0 294 36.1
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.3e-28 132.1 302 39.1
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 1.9e-27 128.3 296 33.8
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.5e-27 127.9 295 35.3
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 9.6e-27 125.9 299 36.5
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 1.4e-25 122.1 286 35.0
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.4e-25 122.1 270 35.6
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 1.8e-25 121.7 299 37.5
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.4e-25 121.3 305 38.0
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 4.1e-25 120.6 287 35.2
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 5.3e-25 120.2 299 38.5
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 6.9e-25 119.8 288 36.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.7e-23 115.2 300 35.3
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.8e-23 114.0 159 45.3
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 8.5e-23 112.8 146 53.4
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.1e-22 112.5 304 34.5
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.4e-22 112.1 259 39.0
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.9e-22 111.7 211 37.9
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 9.3e-22 109.4 256 35.5
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 1.2e-21 109.0 304 36.2
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 3.6e-21 107.5 304 36.2
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 3.3e-19 100.9 295 32.5
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.3e-19 100.5 256 39.1
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 7.4e-19 99.8 187 35.8
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 9.7e-19 99.4 258 34.5
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 8.2e-18 96.3 273 33.0
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.4e-17 95.5 294 32.0
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 5.3e-17 93.6 242 35.5
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.0e-16 91.7 114 44.7
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 2.0e-16 91.7 279 35.5
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 2.6e-16 91.3 298 38.9
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 2.2e-15 88.2 248 35.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 2.9e-15 87.8 253 33.6
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.5e-14 84.7 253 33.2
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.5e-14 84.7 242 34.3
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 2.5e-14 84.7 249 30.9
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.0e-12 79.3 304 32.6
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 2.3e-12 78.2 280 30.4
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.3e-12 78.2 186 33.9
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 3.9e-12 77.4 263 30.8
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 5.1e-12 77.0 251 34.3
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 1.1e-11 75.9 227 32.2
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 3.3e-11 74.3 116 40.5
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 1.7e-10 72.0 70 58.6
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 1.7e-10 72.0 258 30.6
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.8e-10 71.2 108 42.6
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 6.3e-10 70.1 137 40.9
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 6.9e-09 66.6 252 32.1
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.6e-08 64.7 266 29.3
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.6e-08 64.7 285 28.4
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.7e-07 62.0 262 30.9
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 2.2e-07 61.6 253 30.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 8.5e-07 59.7 260 29.6
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 3.2e-06 57.8 106 41.5
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 5.5e-06 57.0 107 35.5
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 7.2e-06 56.6 266 29.3
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 7.2e-06 56.6 267 29.6


User provided reference genes

Program Settings