Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 4.1e-44 181.0 93 100.0
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.3e-29 132.9 80 87.5
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.3e-29 132.9 80 87.5
FAN04G1004 Fragaria x ananassa HOM05D017100 ORTHO05D008036 2.9e-29 131.7 96 79.2
FAN04G2843 Fragaria x ananassa HOM05D017100 ORTHO05D008036 2.9e-29 131.7 96 79.2
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 4.6e-27 124.4 95 73.7
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 3.0e-26 121.7 77 84.4
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 6.8e-23 110.5 75 80.0
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 1.2e-11 73.2 86 50.0
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 3.3e-09 65.1 45 66.7
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.3e-08 63.2 43 62.8
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.3e-08 63.2 69 47.8
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.6e-08 62.8 49 61.2
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.6e-08 62.8 49 61.2
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.6e-08 62.8 49 61.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.8e-08 62.0 46 65.2
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.8e-08 61.2 47 61.7
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.2e-08 60.8 53 52.8
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 1.4e-07 59.7 43 62.8
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.4e-07 59.7 91 39.6
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.8e-07 59.3 47 61.7
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.4e-07 58.9 46 63.0
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.4e-07 58.9 45 57.8
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.4e-07 58.9 73 45.2
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 4.0e-07 58.2 47 57.4
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.0e-07 58.2 77 40.3
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 5.3e-07 57.8 53 45.3
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.3e-07 57.8 68 50.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.3e-07 57.8 52 53.8
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 5.3e-07 57.8 49 55.1
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.0e-07 57.0 44 56.8
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 9.0e-07 57.0 44 59.1
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 9.0e-07 57.0 49 53.1
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.5e-06 56.2 44 56.8
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 1.5e-06 56.2 48 54.2
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 2.0e-06 55.8 53 52.8
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.6e-06 55.5 29 75.9
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.6e-06 55.5 43 58.1
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 3.4e-06 55.1 47 57.4
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-06 55.1 47 57.4
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-06 55.1 47 57.4
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-06 55.1 47 57.4
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.4e-06 54.7 47 57.4
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.4e-06 54.7 95 37.9
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 4.4e-06 54.7 76 40.8
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 4.4e-06 54.7 45 55.6
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 4.4e-06 54.7 37 59.5
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 5.8e-06 54.3 49 51.0
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 5.8e-06 54.3 30 70.0
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 5.8e-06 54.3 33 69.7
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 5.8e-06 54.3 44 54.5
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 5.8e-06 54.3 48 52.1
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 7.6e-06 53.9 48 54.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 7.6e-06 53.9 62 40.3
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 7.6e-06 53.9 47 48.9
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.9e-06 53.5 49 53.1
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.9e-06 53.5 47 55.3
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 9.9e-06 53.5 47 51.1
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.9e-06 53.5 47 51.1
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 9.9e-06 53.5 77 37.7
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 9.9e-06 53.5 48 54.2
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 9.9e-06 53.5 47 55.3
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 9.9e-06 53.5 47 55.3


User provided reference genes

Program Settings