Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 8.1e-120 434.1 278 100.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.0e-95 352.1 279 73.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.0e-95 352.1 279 73.5
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 6.9e-95 351.3 279 73.8
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.0e-94 349.7 279 73.1
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-82 310.5 265 70.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-82 310.5 265 70.6
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.4e-47 194.1 305 46.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-45 187.6 195 58.5
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.6e-43 180.6 161 67.7
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.6e-43 180.6 166 63.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.6e-43 179.5 166 63.3
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 3.6e-43 179.5 167 63.5
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 3.0e-42 176.4 166 63.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.0e-42 176.0 169 62.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 9.7e-41 171.4 162 61.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 9.1e-39 164.9 163 58.9
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 9.1e-39 164.9 163 58.9
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.2e-38 164.5 154 60.4
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.7e-38 163.3 148 58.8
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.5e-38 162.9 152 61.2
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 4.5e-38 162.5 170 57.6
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 5.0e-37 159.1 166 56.6
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.2e-36 156.4 157 59.2
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-35 154.1 162 56.2
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.7e-35 153.3 161 58.4
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.7e-35 152.5 175 56.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.4e-34 151.0 177 54.2
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.3e-34 150.2 155 58.1
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 5.2e-34 149.1 159 52.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 5.2e-34 149.1 159 52.8
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.5e-33 147.5 161 54.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.6e-33 146.7 179 51.4
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 3.4e-33 146.4 168 52.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.4e-33 146.4 148 55.4
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.5e-33 145.2 155 56.8
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 9.8e-33 144.8 155 54.2
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.3e-32 144.4 171 55.6
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-32 144.4 159 54.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.7e-32 144.1 159 52.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.7e-32 144.1 159 56.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.7e-32 144.1 170 53.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.7e-32 144.1 154 56.5
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 2.2e-32 143.7 206 46.6
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.7e-32 142.9 169 52.7
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.7e-32 142.9 152 55.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.7e-32 142.9 152 55.9
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 8.3e-32 141.7 180 50.6
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 8.3e-32 141.7 166 52.4
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.1e-31 141.4 180 50.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.1e-31 141.4 150 54.7
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.4e-31 141.0 157 56.1
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-31 140.6 161 54.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-31 140.6 161 54.0
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 2.4e-31 140.2 177 50.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.1e-31 139.8 155 54.8
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.1e-31 139.4 161 54.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 7.0e-31 138.7 182 50.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 9.1e-31 138.3 169 49.7
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.5e-30 136.3 180 51.1
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.5e-30 136.3 204 47.1
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.5e-30 136.3 204 47.1
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 4.5e-30 136.0 182 50.5
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 4.5e-30 136.0 161 50.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.0e-29 134.8 182 50.0
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.0e-29 134.8 174 50.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.3e-29 134.4 169 51.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.7e-29 134.0 177 50.3
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.8e-29 132.9 183 48.1
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 6.6e-29 132.1 172 51.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.5e-28 131.0 154 50.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 3.3e-28 129.8 181 49.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.3e-28 129.8 188 47.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 3.3e-28 129.8 181 49.2
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 5.5e-28 129.0 172 51.7
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-27 127.1 159 50.9
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-27 127.1 143 53.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.8e-27 126.7 206 45.1
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 6.1e-27 125.6 173 49.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 6.1e-27 125.6 185 48.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.4e-26 124.4 155 50.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.3e-26 123.6 156 50.0
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.0e-26 123.2 180 44.4
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.0e-26 122.9 174 47.7
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 4.0e-26 122.9 154 51.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.8e-26 122.1 153 47.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 8.9e-26 121.7 153 50.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.2e-25 121.3 141 48.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.5e-25 120.9 175 44.6
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.4e-25 119.8 179 47.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.4e-25 119.8 190 43.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 9.8e-25 118.2 182 46.7
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 3.7e-24 116.3 178 45.5
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 6.3e-24 115.5 192 43.8
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.3e-24 115.5 155 48.4
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 8.3e-24 115.2 172 45.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.4e-23 114.4 172 45.3
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.4e-23 113.6 172 44.2
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.2e-22 111.3 137 53.3
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.7e-21 107.5 166 44.6
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 5.0e-21 105.9 166 46.4
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 6.6e-21 105.5 174 44.8
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.1e-20 104.8 168 41.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.9e-20 104.0 145 46.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.5e-20 103.6 173 42.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.5e-20 103.6 179 41.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 5.6e-20 102.4 179 43.0
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 7.3e-20 102.1 162 43.2
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 9.5e-20 101.7 167 43.7
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.2e-19 101.3 164 43.3
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-19 100.9 185 41.6
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 2.1e-19 100.5 168 42.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 3.6e-19 99.8 175 43.4
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 3.6e-19 99.8 175 43.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 6.1e-19 99.0 170 43.5
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.0e-18 98.2 163 44.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-18 97.8 195 40.0
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 3.1e-18 96.7 176 43.2
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.5e-17 94.4 149 43.6
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-16 90.1 131 48.9
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-16 90.1 131 48.9
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-16 90.1 131 48.9
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.9e-16 89.4 170 38.8
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.4e-15 87.0 150 40.0
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.7e-14 83.6 167 41.9
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-13 80.5 128 46.1
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.9e-13 79.7 124 46.8
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.9e-13 79.7 124 46.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 8.6e-13 78.6 168 36.9
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.5e-12 77.8 102 45.1
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.9e-12 77.4 91 52.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.3e-12 76.6 123 45.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 3.3e-12 76.6 178 36.5
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 3.3e-12 76.6 89 52.8
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 4.3e-12 76.3 178 36.5
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-11 74.7 89 51.7
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-11 74.7 123 44.7
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.2e-11 74.7 123 44.7
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.2e-11 74.7 88 51.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.1e-10 71.6 92 48.9
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.4e-10 71.2 72 56.9
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 8.9e-10 68.6 145 38.6
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 8.9e-10 68.6 119 42.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.2e-09 68.2 119 42.0
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-08 63.9 78 47.4
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 6.4e-08 62.4 117 41.9
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 8.3e-08 62.0 158 36.1
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.4e-07 61.2 140 32.9
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 7.1e-07 58.9 113 42.5


User provided reference genes

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