Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 7.8e-192 673.7 359 100.0
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.9e-166 589.3 371 86.3
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 2.5e-166 589.0 373 86.3
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 9.6e-166 587.0 373 86.1
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.3e-165 586.6 373 86.1
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.4e-164 582.4 373 85.8
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.1e-108 397.5 380 61.8
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 5.9e-99 365.2 380 57.6
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.4e-84 316.6 216 80.1
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 1.4e-68 264.2 383 46.5
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 4.6e-67 259.2 367 44.4
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.1e-65 254.6 381 44.1
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.6e-64 249.6 366 44.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 6.9e-63 245.4 397 43.6
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 5.4e-60 235.7 384 43.2
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 1.2e-59 234.6 379 44.6
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 4.6e-59 232.6 386 41.2
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.3e-58 230.3 367 43.6
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 5.1e-58 229.2 384 41.7
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 8.7e-58 228.4 352 46.6
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.1e-56 223.8 234 50.9
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 3.6e-56 223.0 380 42.6
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 4.8e-56 222.6 382 41.1
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 9.0e-55 218.4 282 46.5
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 3.4e-54 216.5 384 42.4
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 7.6e-54 215.3 233 54.1
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.3e-53 214.5 373 42.9
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.8e-53 213.0 235 48.1
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 4.9e-53 212.6 235 48.1
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 6.4e-53 212.2 385 40.0
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 8.4e-53 211.8 282 45.7
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.4e-52 211.1 367 40.3
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 1.4e-52 211.1 233 50.2
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 5.4e-52 209.1 387 41.9
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.6e-51 207.6 367 42.5
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.0e-50 204.9 275 47.3
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.5e-49 200.3 379 42.2
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 2.5e-49 200.3 234 50.4
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.1e-47 194.9 382 37.2
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 5.3e-47 192.6 368 39.9
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.2e-46 191.4 404 36.6
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 1.5e-46 191.0 184 60.3
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 1.5e-46 191.0 368 40.8
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 5.8e-46 189.1 210 51.0
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.6e-46 188.7 235 44.7
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 2.2e-45 187.2 399 36.3
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.1e-44 184.9 385 36.4
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.4e-44 184.5 252 45.6
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.4e-44 184.5 262 45.0
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.5e-44 183.7 224 45.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.2e-44 183.3 224 45.1
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 2.1e-43 180.6 383 38.4
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.9e-43 178.7 224 44.2
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 1.1e-41 174.9 268 43.3
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.9e-41 174.1 288 41.3
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.9e-41 174.1 226 45.6
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 2.5e-41 173.7 224 45.5
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 2.5e-41 173.7 373 35.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 2.1e-40 170.6 331 37.5
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 4.8e-40 169.5 381 38.3
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 8.2e-40 168.7 371 36.1
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 1.1e-39 168.3 366 37.7
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 2.4e-39 167.2 363 37.7
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 6.9e-39 165.6 379 36.7
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.2e-38 164.9 310 40.6
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 4.5e-38 162.9 395 36.7
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 5.8e-38 162.5 372 37.9
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 1.0e-37 161.8 235 45.1
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 1.0e-37 161.8 235 45.1
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.0e-37 161.8 370 36.5
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 1.3e-37 161.4 235 43.8
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 1.7e-37 161.0 205 48.3
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 8.4e-37 158.7 247 42.1
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 1.4e-36 157.9 325 38.2
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 5.5e-36 156.0 292 40.8
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 1.2e-35 154.8 281 41.3
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 1.3e-34 151.4 337 35.3
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 1.8e-34 151.0 330 37.0
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 6.7e-34 149.1 335 40.3
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 3.3e-33 146.7 224 40.2
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 4.3e-33 146.4 294 39.1
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 1.3e-32 144.8 276 39.5
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 6.3e-32 142.5 231 40.3
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 2.4e-31 140.6 271 38.7
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 9.4e-28 128.6 163 46.0
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.7e-27 127.1 359 34.0
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.4e-26 124.8 150 46.7
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 1.7e-24 117.9 204 43.1
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 2.9e-21 107.1 289 36.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.3e-13 81.6 195 34.9
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.1e-12 78.6 219 33.3
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 2.5e-12 77.4 93 54.8
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 8.0e-11 72.4 227 31.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.0e-10 72.0 228 29.8
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 1.4e-10 71.6 240 27.1
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.4e-10 71.6 249 33.3
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 8.8e-10 68.9 370 28.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.1e-09 68.6 359 26.2
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.5e-09 68.2 380 28.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.3e-09 67.0 316 28.2
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 9.7e-09 65.5 276 26.8
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.7e-08 64.7 283 26.9
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.2e-08 64.3 337 28.5
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 4.8e-08 63.2 228 30.3
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.1e-07 60.5 256 31.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.1e-07 60.5 256 27.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 7.0e-07 59.3 230 30.0
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.2e-06 58.5 131 34.4
SMO239G0125 Selaginella moellendorffii HOM05D007666 ORTHO05D009567 1.6e-06 58.2 231 30.3
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.0e-06 57.8 198 28.8


User provided reference genes

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